Deep learning for molecular design—a review of the state of the art

DC Elton, Z Boukouvalas, MD Fuge… - … Systems Design & …, 2019 - pubs.rsc.org
In the space of only a few years, deep generative modeling has revolutionized how we think
of artificial creativity, yielding autonomous systems which produce original images, music …

Fluorine and fluorinated motifs in the design and application of bioisosteres for drug design

NA Meanwell - Journal of medicinal chemistry, 2018 - ACS Publications
The electronic properties and relatively small size of fluorine endow it with considerable
versatility as a bioisostere and it has found application as a substitute for lone pairs of …

Uncovering global-scale risks from commercial chemicals in air

Q Liu, L Li, X Zhang, A Saini, W Li, H Hung, C Hao, K Li… - Nature, 2021 - nature.com
Commercial chemicals are used extensively across urban centres worldwide, posing a
potential exposure risk to 4.2 billion people. Harmful chemicals are often assessed on the …

Molecular sets (MOSES): a benchmarking platform for molecular generation models

D Polykovskiy, A Zhebrak… - Frontiers in …, 2020 - frontiersin.org
Generative models are becoming a tool of choice for exploring the molecular space. These
models learn on a large training dataset and produce novel molecular structures with similar …

The ChEMBL database in 2017

A Gaulton, A Hersey, M Nowotka, AP Bento… - Nucleic acids …, 2017 - academic.oup.com
ChEMBL is an open large-scale bioactivity database (https://www. ebi. ac. uk/chembl),
previously described in the 2012 and 2014 Nucleic Acids Research Database Issues. Since …

BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification

Y Djoumbou-Feunang, J Fiamoncini… - Journal of …, 2019 - Springer
Background A number of computational tools for metabolism prediction have been
developed over the last 20 years to predict the structures of small molecules undergoing …

Applications of fluorine in medicinal chemistry

EP Gillis, KJ Eastman, MD Hill… - Journal of medicinal …, 2015 - ACS Publications
The role of fluorine in drug design and development is expanding rapidly as we learn more
about the unique properties associated with this unusual element and how to deploy it with …

The “cyclopropyl fragment” is a versatile player that frequently appears in preclinical/clinical drug molecules

TT Talele - Journal of medicinal chemistry, 2016 - ACS Publications
Recently, there has been an increasing use of the cyclopropyl ring in drug development to
transition drug candidates from the preclinical to clinical stage. Important features of the …

Reinforced Adversarial Neural Computer for de Novo Molecular Design

E Putin, A Asadulaev, Y Ivanenkov… - Journal of chemical …, 2018 - ACS Publications
In silico modeling is a crucial milestone in modern drug design and development. Although
computer-aided approaches in this field are well-studied, the application of deep learning …

Formation and biological targets of quinones: cytotoxic versus cytoprotective effects

JL Bolton, T Dunlap - Chemical research in toxicology, 2017 - ACS Publications
Quinones represent a class of toxicological intermediates, which can create a variety of
hazardous effects in vivo including, acute cytotoxicity, immunotoxicity, and carcinogenesis …