Assessing and mitigating batch effects in large-scale omics studies

Y Yu, Y Mai, Y Zheng, L Shi - Genome Biology, 2024 - Springer
Batch effects in omics data are notoriously common technical variations unrelated to study
objectives, and may result in misleading outcomes if uncorrected, or hinder biomedical …

Phenomic studies on diseases: potential and challenges

W Ying - Phenomics, 2023 - Springer
The rapid development of such research field as multi-omics and artificial intelligence (AI)
has made it possible to acquire and analyze the multi-dimensional big data of human …

Multi-omics data integration using ratio-based quantitative profiling with Quartet reference materials

Y Zheng, Y Liu, J Yang, L Dong, R Zhang, S Tian… - Nature …, 2024 - nature.com
Abstract Characterization and integration of the genome, epigenome, transcriptome,
proteome and metabolome of different datasets is difficult owing to a lack of ground truth …

[HTML][HTML] CDC20 regulates the cell proliferation and radiosensitivity of P53 mutant HCC cells through the Bcl-2/Bax pathway

S Zhao, Y Zhang, X Lu, H Ding, B Han… - … journal of biological …, 2021 - ncbi.nlm.nih.gov
Purpose: The incidence of hepatocellular carcinoma (HCC) is extremely high, and China
accounts for approximately 50% of global liver cancer cases. Previous studies reported that …

Proteomic and clinical biomarkers for acute mountain sickness in a longitudinal cohort

J Yang, Z Jia, X Song, J Shi, X Wang, X Zhao… - Communications …, 2022 - nature.com
Ascending to high-altitude by non-high-altitude natives is a well-suited model for studying
acclimatization to extreme environments. Acute mountain sickness (AMS) is frequently …

Using physiological system networks to elaborate resilience across frailty states

M Hao, H Zhang, Y Li, X Hu, Z Hu… - The Journals of …, 2024 - academic.oup.com
Background Aging is characterized by loss of resilience, the ability to resist or recover from
stressors. Network analysis has shown promise in investigating dynamic relationships …

Recent advances in predicting acute mountain sickness: from multidimensional cohort studies to cutting-edge model applications

B Wang, S Chen, J Song, D Huang, G Xiao - Frontiers in Physiology, 2024 - frontiersin.org
High-altitude illnesses, encompassing a spectrum of health threats including Acute
Mountain Sickness (AMS), pose significant challenges to individuals exposed to high …

Phenotype correlations reveal the relationships of physiological systems underlying human ageing

M Hao, H Zhang, Z Hu, X Jiang, Q Song, X Wang… - Aging …, 2021 - Wiley Online Library
Ageing is characterized by degeneration and loss of function across multiple physiological
systems. To study the mechanisms and consequences of ageing, several metrics have been …

Malignant Tumor Purity Reveals the Driven and Prognostic Role of CD3E in Low-Grade Glioma Microenvironment

X Lu, C Li, W Xu, Y Wu, J Wang, S Chen… - Frontiers in …, 2021 - frontiersin.org
The tumor microenvironment (TME) contributes to the initiation and progression of many
neoplasms. However, the impact of low-grade glioma (LGG) purity on carcinogenesis …

Aldehyde dehydrogenase 2 serves as a key cardiometabolic adaptation regulator in response to plateau hypoxia in mice

R Gao, K Yang, S Le, H Chen, X Sun, Z Dong… - Translational …, 2024 - Elsevier
High-altitude heart disease (HAHD) is a complex pathophysiological condition related to
systemic hypobaric hypoxia in response to transitioning to high altitude. Hypoxia can cause …