QSAR without borders

EN Muratov, J Bajorath, RP Sheridan… - Chemical Society …, 2020 - pubs.rsc.org
Prediction of chemical bioactivity and physical properties has been one of the most
important applications of statistical and more recently, machine learning and artificial …

Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

An unprecedented revolution in medicinal chemistry driven by the progress of biological science

KC Chou - Current topics in medicinal chemistry, 2017 - ingentaconnect.com
The eternal or ultimate goal of medicinal chemistry is to find most effective ways to treat
various diseases and extend human beings' life as long as possible. Human being is a …

ChemoPy: freely available python package for computational biology and chemoinformatics

DS Cao, QS Xu, QN Hu, YZ Liang - Bioinformatics, 2013 - academic.oup.com
Motivation: Molecular representation for small molecules has been routinely used in
QSAR/SAR, virtual screening, database search, ranking, drug ADME/T prediction and other …

pLoc-mVirus: predict subcellular localization of multi-location virus proteins via incorporating the optimal GO information into general PseAAC

X Cheng, X Xiao, KC Chou - Gene, 2017 - Elsevier
Abstract Knowledge of subcellular locations of proteins is crucially important for in-depth
understanding their functions in a cell. With the explosive growth of protein sequences …

Characterization of structure–antioxidant activity relationship of peptides in free radical systems using QSAR models: Key sequence positions and their amino acid …

YW Li, B Li - Journal of Theoretical Biology, 2013 - Elsevier
Antioxidative peptides have attracted increasing attention from researchers because of their
antioxidant properties as natural materials in functional food and for applications in …

Large-scale modeling of multispecies acute toxicity end points using consensus of multitask deep learning methods

S Jain, VB Siramshetty, VM Alves… - Journal of chemical …, 2021 - ACS Publications
Computational methods to predict molecular properties regarding safety and toxicology
represent alternative approaches to expedite drug development, screen environmental …

Graphic rule for drug metabolism systems

KC Chou - Current drug metabolism, 2010 - ingentaconnect.com
Using graphic rules to deal with kinetic systems is an elegant approach by combining the
graph representation (schematic representation) and rigorous mathematical derivation. It …

Prediction of cell wall lytic enzymes using Chou's amphiphilic pseudo amino acid composition

H Ding, L Luo, H Lin - Protein and peptide letters, 2009 - ingentaconnect.com
Discriminating cell wall lytic enzymes from non lytic enzymes is a very important task for
curing bacterial infections. In this paper, based on Chou's amphiphilic pseudo amino acid …

Predictions of the ADMET properties of candidate drug molecules utilizing different QSAR/QSPR modelling approaches

M Tareq Hassan Khan - Current drug metabolism, 2010 - ingentaconnect.com
The integration of early ADMET (absorption, distribution, metabolism, excretion and toxicity)
profiling, or simply prediction, of'lead'molecules to speed-up the'lead'selection further for …