Predictive and prognostic molecular markers for cancer medicine

S Mehta, A Shelling, A Muthukaruppan… - … in medical oncology, 2010 - journals.sagepub.com
Over the last 10 years there has been an explosion of information about the molecular
biology of cancer. A challenge in oncology is to translate this information into advances in …

Colorectal Neoplasia Differentially Expressed (CRNDE), a Novel Gene with Elevated Expression in Colorectal Adenomas and Adenocarcinomas

LD Graham, SK Pedersen, GS Brown, T Ho… - Genes & …, 2011 - journals.sagepub.com
An uncharacterized gene locus (Chr16: hCG_1815491), now named colorectal neoplasia
differentially expressed (gene symbol CRNDE), is activated early in colorectal neoplasia …

Inherited and acquired alterations in development of breast cancer

P Rizzolo, V Silvestri, M Falchetti… - The application of clinical …, 2011 - Taylor & Francis
Breast cancer is the most common cancer among women, accounting for about 30% of all
cancers. In contrast, breast cancer is a rare disease in men, accounting for less than 1% of …

[HTML][HTML] RNA sequencing of cancer reveals novel splicing alterations

J Eswaran, A Horvath, S Godbole, SD Reddy… - Scientific reports, 2013 - nature.com
Breast cancer transcriptome acquires a myriad of regulation changes and splicing is critical
for the cell to “tailor-make” specific functional transcripts. We systematically revealed splicing …

Ribosomal RNA 2′ O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer

V Marcel, J Kielbassa, V Marchand, KS Natchiar… - NAR …, 2020 - academic.oup.com
Recent epitranscriptomics studies unravelled that ribosomal RNA (rRNA) 2′ O-methylation
is an additional layer of gene expression regulation highlighting the ribosome as a novel …

Targeting the deregulated spliceosome core machinery in cancer cells triggers mTOR blockade and autophagy

V Quidville, S Alsafadi, A Goubar, F Commo, V Scott… - Cancer research, 2013 - AACR
The spliceosome is a large ribonucleoprotein complex that guides pre-mRNA splicing in
eukaryotic cells. Here, we determine whether the spliceosome could constitute an attractive …

How many lymph nodes are enough? Assessing the adequacy of lymph node yield for papillary thyroid cancer

TJ Robinson, S Thomas, MA Dinan… - Journal of Clinical …, 2016 - ascopubs.org
Purpose Patients who undergo surgery for papillary thyroid cancer with only a limited lymph
node examination are thought to be at risk for potentially harboring occult disease. However …

Unsupervised clustering of quantitative image phenotypes reveals breast cancer subtypes with distinct prognoses and molecular pathways

J Wu, Y Cui, X Sun, G Cao, B Li, DM Ikeda… - Clinical Cancer …, 2017 - AACR
Purpose: To identify novel breast cancer subtypes by extracting quantitative imaging
phenotypes of the tumor and surrounding parenchyma and to elucidate the underlying …

A genome-wide aberrant RNA splicing in patients with acute myeloid leukemia identifies novel potential disease markers and therapeutic targets

S Adamia, B Haibe-Kains, PM Pilarski, M Bar-Natan… - Clinical cancer …, 2014 - AACR
Purpose: Despite new treatments, acute myeloid leukemia (AML) remains an incurable
disease. More effective drug design requires an expanded view of the molecular complexity …

An empirical assessment of validation practices for molecular classifiers

PJ Castaldi, IJ Dahabreh… - Briefings in …, 2011 - academic.oup.com
Proposed molecular classifiers may be overfit to idiosyncrasies of noisy genomic and
proteomic data. Cross-validation methods are often used to obtain estimates of classification …