FASDA: An FPGA-aided, scalable and distributed accelerator for range-limited molecular dynamics

C Wu, T Geng, A Guo, S Bandara, P Haghi… - Proceedings of the …, 2023 - dl.acm.org
Conducting long-timescale simulations of small molecules using Molecular Dynamics (MD)
is crucial in drug design. However, traditional methods to accelerate the process, including …

[图书][B] Analog computing

B Ulmann - 2013 - degruyter.com
Ulmann, Analog Computing (75518) Page 1 Bibliography [Adler 1968] Helmut Adler,
Elektronische Analogrechner, VEB Deutscher Verlag der Wissenschaften, Berlin, 1968 [Admiralty …

Scalable multi-FPGA design of a discontinuous Galerkin shallow-water model on unstructured meshes

J Faj, T Kenter, S Faghih-Naini, C Plessl… - Proceedings of the …, 2023 - dl.acm.org
FPGAs are fostering interest as energy-efficient accelerators for scientific simulations,
including for methods operating on unstructured meshes. Considering the potential impact …

Noctua2 Supercomputer

C Bauer, T Kenter, M Lass… - … of large-scale …, 2024 - … -of-large-scale-research-facilities.org
Noctua 2 is a supercomputer operated at the Paderborn Center for Parallel Computing
(PC2) at Paderborn University in Germany. Noctua 2 was inaugurated in 2022 and is an …

[HTML][HTML] Automated parallel execution of distributed task graphs with FPGA clusters

JM de Haro Ruiz, CÁ Martínez… - Future Generation …, 2024 - Elsevier
Abstract Over the years, Field Programmable Gate Arrays (FPGA) have been gaining
popularity in the High Performance Computing (HPC) field, because their reconfigurability …

FPGA acceleration for HPC supercapacitor simulations

C Prouveur, M Haefele, T Kenter, N Voss - Proceedings of the Platform …, 2023 - dl.acm.org
In the search of more energy efficient computing devices that could be assembled to build
future exascale systems, this study proposes a chip to chip comparison between a CPU, a …

Algorithms for Fast Spiking Neural Network Simulation on FPGAs

BA Lindqvist, A Podobas - IEEE Access, 2024 - ieeexplore.ieee.org
Spiking Neural Networks (SNNs) are models that mimic and replicate the computational
properties of the biological brain. Computation is performed using neurons that transmit …

A first step towards support for mpi partitioned communication on sycl-programmed fpgas

S Christgau, M Knaust, T Steinke - 2022 IEEE/ACM …, 2022 - ieeexplore.ieee.org
Version 4.0 of the Message Passing Interface standard introduced the concept of Partitioned
Communication, which adds support for multiple contributions to a communication buffer …

Optimizing Communication for Latency Sensitive HPC Applications on up to 48 FPGAs Using ACCL

M Meyer, T Kenter, L Petrica, K O'Brien, M Blott… - … Conference on Parallel …, 2024 - Springer
Most FPGA boards in the HPC domain are well-suited for parallel scaling because of the
direct integration of versatile and high-throughput network ports. However, the utilization of …

Fast Algorithms for Spiking Neural Network Simulation with FPGAs

BA Lindqvist, A Podobas - arXiv preprint arXiv:2405.02019, 2024 - arxiv.org
Using OpenCL-based high-level synthesis, we create a number of spiking neural network
(SNN) simulators for the Potjans-Diesmann cortical microcircuit for a high-end Field …