Motivation: As the quantity of data per sequencing experiment increases, the challenges of
fragment assembly are becoming increasingly computational. The de Bruijn graph is a …

Hybrid MPI+ Threads programming has emerged as an alternative model to the “MPI
everywhere” model to better handle the increasing core density in cluster nodes. While the …

As the core density of future processors keeps increasing, MPI+ Threads is becoming a
promising programming model for large scale SMP clusters. Generally speaking, hybrid …

Background There is a widening gap between the throughput of massive parallel
sequencing machines and the ability to analyze these sequencing data. Traditional …

In this paper, we analyze and optimize the most time-consuming steps of the SWAP-
Assembler, a parallel genome assembler, so that it can scale to a large number of cores for …

The proliferation of content based image retrieval techniques has highlighted the need to
understand the relationship between image clustering based on low-level image features …

This work was supported by JSPS KAKENHI Grant Number 23220003 and by the US
Department of Energy, Office of Science, under Contract DE-AC02-06CH11357. Authors …

Data-intensive applications have become increasingly important in recent years, yet
traditional data movement approaches for scientific computation are not well suited for such …

El modelado de aplicaciones científicas paralelas nos permite conocer los detalles del
comportamiento de las aplicaciones paralelas. Muchas aplicaciones científicas tienen un …

Data-intensive applications, such as those in bioinformatics and social network analysis,
differ from traditional scientific applications in that they often involve data-driven and …