Exploring β-sheet structure and interactions with chemical model systems

JS Nowick - Accounts of chemical research, 2008 - ACS Publications
What I cannot create, I do not understand. Richard P. Feynman β-Sheets consist of
extended polypeptide strands (β-strands) connected by a network of hydrogen bonds and …

Tryptophan residues: Scarce in proteins but strong stabilizers of β‐hairpin peptides

CM Santiveri, MA Jiménez - Peptide Science, 2010 - Wiley Online Library
Tryptophan plays important roles in protein stability and recognition despite its scarcity in
proteins. Except as fluorescent groups, they have been used rarely in peptide design …

Minimization and optimization of designed β-hairpin folds

NH Andersen, KA Olsen, RM Fesinmeyer… - Journal of the …, 2006 - ACS Publications
Minimized β hairpins have provided additional data on the geometric preferences of Trp
interactions in TW-loop-WT motifs. This motif imparts significant fold stability to peptides as …

Computational design of a cyclic peptide that inhibits the CTLA4 immune checkpoint

R Thakkar, D Upreti, S Ishiguro, M Tamura… - RSC Medicinal …, 2023 - pubs.rsc.org
Proteins involved in immune checkpoint pathways, such as CTLA4, PD1, and PD-L1, have
become important targets for cancer immunotherapy; however, development of small …

Role of tryptophan− tryptophan interactions in trpzip β-hairpin formation, structure, and stability

L Wu, D McElheny, R Huang, TA Keiderling - Biochemistry, 2009 - ACS Publications
A series of β-hairpin peptides based on variations of the TrpZip2 sequence,
SWTWENGKWTWK, of Cochran and co-workers were studied using electronic circular …

Stabilization of β-hairpin peptides by salt bridges: Role of preorganization in the energetic contribution of weak interactions

B Ciani, M Jourdan, MS Searle - Journal of the American …, 2003 - ACS Publications
A model β-hairpin peptide has been used to investigate the context-dependent contribution
of cross-strand Lys− Glu interactions to hairpin stability. We have mutated two Ser− Lys …

Stabilizing capping motif for β-hairpins and sheets

BL Kier, I Shu, LA Eidenschink… - Proceedings of the …, 2010 - National Acad Sciences
Although much has been learned about the design of models of β-sheets during the last
decade, modest fold stabilities in water and terminal fraying remain a feature of most β …

Using thioamides to site-specifically interrogate the dynamics of hydrogen bond formation in β-sheet folding

RM Culik, H Jo, WF DeGrado, F Gai - Journal of the American …, 2012 - ACS Publications
Thioamides are sterically almost identical to their oxoamide counterparts, but they are
weaker hydrogen bond acceptors. Therefore, thioamide amino acids are excellent …

Prediction of protein solvent accessibility using fuzzy k-nearest neighbor method

J Sim, SY Kim, J Lee - Bioinformatics, 2005 - academic.oup.com
Motivation: The solvent accessibility of amino acid residues plays an important role in tertiary
structure prediction, especially in the absence of significant sequence similarity of a query …

Design of β-sheet systems for understanding the thermodynamics and kinetics of protein folding

MS Searle, B Ciani - Current Opinion in Structural Biology, 2004 - Elsevier
Peptide β-sheet systems have emerged as context-independent models for probing
secondary structure propensities, the nature and magnitude of stabilizing weak interactions …