Theory of protein folding: the energy landscape perspective

JN Onuchic, Z Luthey-Schulten… - Annual review of …, 1997 - annualreviews.org
▪ Abstract The energy landscape theory of protein folding is a statistical description of a
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …

From Levinthal to pathways to funnels

KA Dill, HS Chan - Nature structural biology, 1997 - nature.com
From Levinthalto pathways to funnels Page 1 TS 9 1997 Nature Publishing Group http://www.nature.com/nsmb
perspective From Levinthalto pathways to funnels Ken A. Dill and Hue Sun Chan A new …

Contact order, transition state placement and the refolding rates of single domain proteins

KW Plaxco, KT Simons, D Baker - Journal of molecular biology, 1998 - Elsevier
Theoretical studies have suggested relationships between the size, stability and topology of
a protein fold and the rate and mechanisms by which it is achieved. The recent …

Conformational selection or induced fit: a flux description of reaction mechanism

GG Hammes, YC Chang… - Proceedings of the …, 2009 - National Acad Sciences
The mechanism of ligand binding coupled to conformational changes in macromolecules
has recently attracted considerable interest. The 2 limiting cases are the “induced fit” …

Unfolded proteins and protein folding studied by NMR

HJ Dyson, PE Wright - Chemical reviews, 2004 - ACS Publications
Preparation of biological macromolecules in the pure state requires that cells be disrupted,
releasing and mixing the contents. Only the most stable and highly structured molecules can …

Nucleation mechanisms in protein folding

AR Fersht - Current opinion in structural biology, 1997 - Elsevier
Experiment and theory are converging on the importance of nucleation mechanisms in
protein folding. These mechanisms do not use classic nuclei, which are well formed …

Polymer principles and protein folding

KA Dill - Protein Science, 1999 - cambridge.org
This paper surveys the emerging role of statistical mechanics and polymer theory in protein
folding. In the polymer perspective, the folding code is more a solvation code than a code of …

Optimization of rates of protein folding: the nucleation-condensation mechanism and its implications.

AR Fersht - Proceedings of the National Academy of …, 1995 - National Acad Sciences
Small, single-module proteins that fold in a single cooperative step may be paradigms for
understanding early events in protein-folding pathways generally. Recent experimental …

Fast kinetics and mechanisms in protein folding

WA Eaton, V Muñoz, SJ Hagen, GS Jas… - Annual review of …, 2000 - annualreviews.org
▪ Abstract This review describes how kinetic experiments using techniques with dramatically
improved time resolution have contributed to understanding mechanisms in protein folding …

The complete folding pathway of a protein from nanoseconds to microseconds

U Mayor, NR Guydosh, CM Johnson, JG Grossmann… - Nature, 2003 - nature.com
Combining experimental and simulation data to describe all of the structures and the
pathways involved in folding a protein is problematical. Transition states can be mapped …