Bacterial genome reduction for optimal chassis of synthetic biology: a review

S Ma, T Su, X Lu, Q Qi - Critical Reviews in Biotechnology, 2024 - Taylor & Francis
Bacteria with streamlined genomes, that harbor full functional genes for essential metabolic
networks, are able to synthesize the desired products more effectively and thus have …

Bacterial genome reductions: Tools, applications, and challenges

N LeBlanc, TC Charles - Frontiers in Genome Editing, 2022 - frontiersin.org
Bacterial cells are widely used to produce value-added products due to their versatility, ease
of manipulation, and the abundance of genome engineering tools. However, the efficiency of …

Orthogonal LoxPsym sites allow multiplexed site-specific recombination in prokaryotic and eukaryotic hosts

C Cautereels, J Smets, J De Saeger, L Cool… - Nature …, 2024 - nature.com
Site-specific recombinases such as the Cre-LoxP system are routinely used for genome
engineering in both prokaryotes and eukaryotes. Importantly, recombinases complement the …

Gradients in gene essentiality reshape antibacterial research

AM Hogan, ST Cardona - FEMS Microbiology Reviews, 2022 - academic.oup.com
Essential genes encode the processes that are necessary for life. Until recently, commonly
applied binary classifications left no space between essential and non-essential genes. In …

Gene editing tools for mycoplasmas: references and future directions for efficient genome manipulation

G Zhao, D Lu, M Li, Y Wang - Frontiers in Microbiology, 2023 - frontiersin.org
Mycoplasmas are successful pathogens that cause debilitating diseases in humans and
various animal hosts. Despite the exceptionally streamlined genomes, mycoplasmas have …

A review of synthetic biology tools in Yarrowia lipolytica

L Cao, J Li, Z Yang, X Hu, P Wang - World Journal of Microbiology and …, 2023 - Springer
Yarrowia lipolytica is a non-conventional oleaginous yeast with great potential for industrial
production. Y. lipolytica has a high propensity for flux through tricarboxylic acid cycle …

ProTInSeq: transposon insertion tracking by ultra-deep DNA sequencing to identify translated large and small ORFs

S Miravet-Verde, R Mazzolini, C Segura-Morales… - nature …, 2024 - nature.com
Identifying open reading frames (ORFs) being translated is not a trivial task. ProTInSeq is a
technique designed to characterize proteomes by sequencing transposon insertions …

Random genome reduction coupled with polyhydroxybutyrate biosynthesis to facilitate its accumulation in Escherichia coli

S Ma, T Su, J Liu, Q Wang, Q Liang, X Lu… - … in Bioengineering and …, 2022 - frontiersin.org
Genome reduction has been emerged as a powerful tool to construct ideal chassis for
synthetic biology. Random genome reduction couple genomic deletion with growth and has …

Shedding light on bacteria–host interactions with the aid of TnSeq approaches

M Torres, S Paszti, L Eberl - Mbio, 2024 - Am Soc Microbiol
Bacteria are highly adaptable and grow in diverse niches, where they often interact with
eukaryotic organisms. These interactions with different hosts span the entire spectrum from …

Fine mapping of major QTL qshgd1 for spontaneous haploid genome doubling in maize (Zea mays L.)

TL Foster, M Kloiber-Maitz, L Gilles, UK Frei… - Theoretical and Applied …, 2024 - Springer
Key message A large-effect QTL was fine mapped, which revealed 79 gene models, with 10
promising candidate genes, along with a novel inversion. Abstract In commercial maize …