Machine learning approaches and databases for prediction of drug–target interaction: a survey paper

M Bagherian, E Sabeti, K Wang… - Briefings in …, 2021 - academic.oup.com
The task of predicting the interactions between drugs and targets plays a key role in the
process of drug discovery. There is a need to develop novel and efficient prediction …

Progress in molecular docking

J Fan, A Fu, L Zhang - Quantitative Biology, 2019 - Springer
Background In recent years, since the molecular docking technique can greatly improve the
efficiency and reduce the research cost, it has become a key tool in computer-assisted drug …

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

AS Rifaioglu, H Atas, MJ Martin… - Briefings in …, 2019 - academic.oup.com
The identification of interactions between drugs/compounds and their targets is crucial for
the development of new drugs. In vitro screening experiments (ie bioassays) are frequently …

SimBoost: a read-across approach for predicting drug–target binding affinities using gradient boosting machines

T He, M Heidemeyer, F Ban, A Cherkasov… - Journal of …, 2017 - Springer
Computational prediction of the interaction between drugs and targets is a standing
challenge in the field of drug discovery. A number of rather accurate predictions were …

Network‐based approaches in pharmacology

B Boezio, K Audouze, P Ducrot… - Molecular …, 2017 - Wiley Online Library
In drug discovery, network‐based approaches are expected to spotlight our understanding
of drug action across multiple layers of information. On one hand, network pharmacology …

Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

Similarity-based machine learning methods for predicting drug–target interactions: a brief review

H Ding, I Takigawa, H Mamitsuka… - Briefings in …, 2014 - academic.oup.com
Computationally predicting drug–target interactions is useful to select possible drug (or
target) candidates for further biochemical verification. We focus on machine learning-based …

A systematic prediction of multiple drug-target interactions from chemical, genomic, and pharmacological data

H Yu, J Chen, X Xu, Y Li, H Zhao, Y Fang, X Li, W Zhou… - PloS one, 2012 - journals.plos.org
In silico prediction of drug-target interactions from heterogeneous biological data can
advance our system-level search for drug molecules and therapeutic targets, which efforts …

Improving compound–protein interaction prediction by building up highly credible negative samples

H Liu, J Sun, J Guan, J Zheng, S Zhou - Bioinformatics, 2015 - academic.oup.com
Motivation: Computational prediction of compound–protein interactions (CPIs) is of great
importance for drug design and development, as genome-scale experimental validation of …

[HTML][HTML] A comprehensive review of feature based methods for drug target interaction prediction

K Sachdev, MK Gupta - Journal of biomedical informatics, 2019 - Elsevier
Drug target interaction is a prominent research area in the field of drug discovery. It refers to
the recognition of interactions between chemical compounds and the protein targets in the …