Regulation of vascular inflammation and remodeling by ETS factors

P Oettgen - Circulation research, 2006 - Am Heart Assoc
The ETS (E 26 T ransformation-specific S equence) factors are comprised of a family of
transcription factors that share a highly conserved DNA binding domain. Although originally …

[HTML][HTML] A high-fat, ketogenic diet induces a unique metabolic state in mice

AR Kennedy, P Pissios, H Otu, B Xue… - American Journal …, 2007 - journals.physiology.org
Ketogenic diets have been used as an approach to weight loss on the basis of the
theoretical advantage of a low-carbohydrate, high-fat diet. To evaluate the physiological and …

Arabidopsis systemic immunity uses conserved defense signaling pathways and is mediated by jasmonates

W Truman, MH Bennett, I Kubigsteltig… - Proceedings of the …, 2007 - National Acad Sciences
In the absence of adaptive immunity displayed by animals, plants respond locally to biotic
challenge via inducible basal defense networks activated through recognition and response …

Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data

X Zhang, X Lu, Q Shi, X Xu, HCE Leung, LN Harris… - BMC …, 2006 - Springer
Background Like microarray-based investigations, high-throughput proteomics techniques
require machine learning algorithms to identify biomarkers that are informative for biological …

Analysis of orthologous gene expression between human pulmonary adenocarcinoma and a carcinogen-induced murine model

RS Stearman, L Dwyer-Nield, L Zerbe… - The American journal of …, 2005 - Elsevier
Human adenocarcinoma (AC) is the most frequently diagnosed human lung cancer, and its
absolute incidence is increasing dramatically. Compared to human lung AC, the A/J mouse …

Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset

SE Choe, M Boutros, AM Michelson, GM Church… - Genome biology, 2005 - Springer
Background As more methods are developed to analyze RNA-profiling data, assessing their
performance using control datasets becomes increasingly important. Results We present …

Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance

W Truman, MT de Zabala, M Grant - The Plant Journal, 2006 - Wiley Online Library
To successfully infect a plant, bacterial pathogens inject a collection of Type III effector
proteins (TTEs) directly into the plant cell that function to overcome basal defences and …

Analysis and management of microarray gene expression data

GR Grant, E Manduchi… - Current protocols in …, 2007 - Wiley Online Library
Microarray experiments require careful planning and choice of analysis tools in order to get
the most out of the data generated, especially considering the associated significant cost …

Tracing the dynamics of gene transcripts after organismal death

AE Pozhitkov, R Neme, T Domazet-Lošo… - Open …, 2017 - royalsocietypublishing.org
In life, genetic and epigenetic networks precisely coordinate the expression of genes—but in
death, it is not known if gene expression diminishes gradually or abruptly stops or if specific …

Expression profiling of the developing and mature Nrl −/− mouse retina: identification of retinal disease candidates and transcriptional regulatory targets …

S Yoshida, AJ Mears, JS Friedman… - Human molecular …, 2004 - academic.oup.com
The rod photoreceptor-specific neural retina leucine zipper protein Nrl is essential for rod
differentiation and plays a critical role in regulating gene expression. In the mouse retina …