Fundamental photophysics of isomorphic and expanded fluorescent nucleoside analogues

D Dziuba, P Didier, S Ciaco, A Barth… - Chemical Society …, 2021 - pubs.rsc.org
Fluorescent nucleoside analogues (FNAs) are structurally diverse mimics of the natural
essentially non-fluorescent nucleosides which have found numerous applications in probing …

2-aminopurine as a fluorescent probe of DNA conformation and the DNA–enzyme interface

AC Jones, RK Neely - Quarterly reviews of biophysics, 2015 - cambridge.org
Nearly 50 years since its potential as a fluorescent base analogue was first recognized, 2-
aminopurine (2AP) continues to be the most widely used fluorescent probe of DNA structure …

Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids

A Iqbal, S Arslan, B Okumus… - Proceedings of the …, 2008 - National Acad Sciences
We have found that the efficiency of fluorescence resonance energy transfer between Cy3
and Cy5 terminally attached to the 5′ ends of a DNA duplex is significantly affected by the …

Adenine and 2-aminopurine: paradigms of modern theoretical photochemistry

L Serrano-Andres, M Merchan… - Proceedings of the …, 2006 - National Acad Sciences
Distinct photophysical behavior of nucleobase adenine and its constitutional isomer, 2-
aminopurine, has been studied by using quantum chemical methods, in particular an …

On the origin of the canonical nucleobases: an assessment of selection pressures across chemical and early biological evolution

AC Rios, Y Tor - Israel journal of chemistry, 2013 - Wiley Online Library
The native bases of RNA and DNA are prominent examples of the narrow selection of
organic molecules upon which life is based. How did nature “decide” upon these specific …

The copious photochemistry of 2, 6‐diaminopurine: luminescence, triplet population, and ground state recovery

LMF Oliveira, D Valverde, GJ Costa… - Photochemistry and …, 2024 - Wiley Online Library
Abstract 9H‐and 7H‐2, 6‐Diaminopurine (26DAP) photoinduced events in vacuum were
studied at the MS‐CASPT2/cc‐pVDZ level of theory. The S1 1 (ππ* La) state is initially …

Time-resolved fluorescence of 2-aminopurine as a probe of base flipping in M. HhaI–DNA complexes

RK Neely, D Daujotyte, S Grazulis… - Nucleic Acids …, 2005 - academic.oup.com
DNA base flipping is an important mechanism in molecular enzymology, but its study is
limited by the lack of an accessible and reliable diagnostic technique. A series of crystalline …

Role of intersystem crossing in the fluorescence quenching of 2-aminopurine 2'-deoxyriboside in solution

C Reichardt, C Wen, RA Vogt… - Photochemical & …, 2013 - Springer
Aminopurine is a fluorescent probe widely used to study local dynamics as well as charge
and energy transfer reactions in DNA/RNA. Despite its broad utilization, the nonradiative …

Synthesis of 4-Aminophthalimide and 2,4-Diaminopyrimidine C-Nucleosides as Isosteric Fluorescent DNA Base Substitutes

M Weinberger, F Berndt, R Mahrwald… - The Journal of …, 2013 - ACS Publications
The 4-aminophthalimide C-nucleoside 1 was designed as an isosteric DNA base surrogate,
and a synthetic route to nucleoside 1 together with the 2, 4-diaminopyrimidine-C-nucleoside …

Influence of base stacking and hydrogen bonding on the fluorescence of 2-aminopurine and pyrrolocytosine in nucleic acids

SJO Hardman, KC Thompson - Biochemistry, 2006 - ACS Publications
Fluorescent nucleobase analogues are used extensively to probe the structure and
dynamics of nucleic acids. The fluorescence of the adenine analogue 2-aminopurine and …