The transformational role of GPU computing and deep learning in drug discovery

M Pandey, M Fernandez, F Gentile, O Isayev… - Nature Machine …, 2022 - nature.com
Deep learning has disrupted nearly every field of research, including those of direct
importance to drug discovery, such as medicinal chemistry and pharmacology. This …

The value of antimicrobial peptides in the age of resistance

M Magana, M Pushpanathan, AL Santos… - The lancet infectious …, 2020 - thelancet.com
Accelerating growth and global expansion of antimicrobial resistance has deepened the
need for discovery of novel antimicrobial agents. Antimicrobial peptides have clear …

Deep docking: a deep learning platform for augmentation of structure based drug discovery

F Gentile, V Agrawal, M Hsing, AT Ton, F Ban… - ACS central …, 2020 - ACS Publications
Drug discovery is a rigorous process that requires billion dollars of investments and decades
of research to bring a molecule “from bench to a bedside”. While virtual docking can …

Count-based morgan fingerprint: a more efficient and interpretable molecular representation in developing machine learning-based predictive regression models for …

S Zhong, X Guan - Environmental Science & Technology, 2023 - ACS Publications
In this study, we introduce the count-based Morgan fingerprint (C-MF) to represent chemical
structures of contaminants and develop machine learning (ML)-based predictive models for …

Artificial intelligence in drug discovery: applications and techniques

J Deng, Z Yang, I Ojima, D Samaras… - Briefings in …, 2022 - academic.oup.com
Artificial intelligence (AI) has been transforming the practice of drug discovery in the past
decade. Various AI techniques have been used in many drug discovery applications, such …

[HTML][HTML] Artificial intelligence in drug discovery: what is realistic, what are illusions? Part 2: a discussion of chemical and biological data

A Bender, I Cortes-Ciriano - Drug Discovery Today, 2021 - Elsevier
Highlights•Drug discovery data and data from other sources are different in quantity and
characteristics.•This article underlines the difference of data from different domains.•In order …

Machine learning toxicity prediction: latest advances by toxicity end point

CN Cavasotto, V Scardino - ACS omega, 2022 - ACS Publications
Machine learning (ML) models to predict the toxicity of small molecules have garnered great
attention and have become widely used in recent years. Computational toxicity prediction is …

Artificial neural networks in contemporary toxicology research

I Pantic, J Paunovic, J Cumic, S Valjarevic… - Chemico-Biological …, 2023 - Elsevier
Artificial neural networks (ANNs) have a huge potential in toxicology research. They may be
used to predict toxicity of various chemical compounds or classify the compounds based on …

An overview of machine learning and big data for drug toxicity evaluation

AH Vo, TR Van Vleet, RR Gupta… - Chemical research in …, 2019 - ACS Publications
Drug toxicity evaluation is an essential process of drug development as it is reportedly
responsible for the attrition of approximately 30% of drug candidates. The rapid increase in …

DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations

AS Rifaioglu, E Nalbat, V Atalay, MJ Martin… - Chemical …, 2020 - pubs.rsc.org
The identification of physical interactions between drug candidate compounds and target
biomolecules is an important process in drug discovery. Since conventional screening …