Methods for mapping 3D chromosome architecture

R Kempfer, A Pombo - Nature Reviews Genetics, 2020 - nature.com
Determining how chromosomes are positioned and folded within the nucleus is critical to
understanding the role of chromatin topology in gene regulation. Several methods are …

[HTML][HTML] The era of 3D and spatial genomics

BAM Bouwman, N Crosetto, M Bienko - Trends in genetics, 2022 - cell.com
Over a decade ago the advent of high-throughput chromosome conformation capture (Hi-C)
sparked a new era of 3D genomics. Since then the number of methods for mapping the 3D …

An atlas of genetic influences on osteoporosis in humans and mice

JA Morris, JP Kemp, SE Youlten, L Laurent, JG Logan… - Nature …, 2019 - nature.com
Osteoporosis is a common aging-related disease diagnosed primarily using bone mineral
density (BMD). We assessed genetic determinants of BMD as estimated by heel quantitative …

Ultrastructural details of mammalian chromosome architecture

N Krietenstein, S Abraham, SV Venev, N Abdennur… - Molecular cell, 2020 - cell.com
Over the past decade, 3C-related methods have provided remarkable insights into
chromosome folding in vivo. To overcome the limited resolution of prior studies, we extend a …

Systematic evaluation of chromosome conformation capture assays

B Akgol Oksuz, L Yang, S Abraham, SV Venev… - Nature …, 2021 - nature.com
Chromosome conformation capture (3C) assays are used to map chromatin interactions
genome-wide. Chromatin interaction maps provide insights into the spatial organization of …

SPEN integrates transcriptional and epigenetic control of X-inactivation

F Dossin, I Pinheiro, JJ Żylicz, J Roensch, S Collombet… - Nature, 2020 - nature.com
Xist represents a paradigm for the function of long non-coding RNA in epigenetic regulation,
although how it mediates X-chromosome inactivation (XCI) remains largely unexplained …

The little skate genome and the evolutionary emergence of wing-like fins

F Marlétaz, E de la Calle-Mustienes, RD Acemel… - Nature, 2023 - nature.com
Skates are cartilaginous fish whose body plan features enlarged wing-like pectoral fins,
enabling them to thrive in benthic environments,. However, the molecular underpinnings of …

CTCF–CTCF loops and intra-TAD interactions show differential dependence on cohesin ring integrity

Y Liu, J Dekker - Nature cell biology, 2022 - nature.com
The ring-like cohesin complex mediates sister-chromatid cohesion by encircling pairs of
sister chromatids. Cohesin also extrudes loops along chromatids. Whether the two activities …

Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics

H Belaghzal, T Borrman, AD Stephens, DL Lafontaine… - Nature …, 2021 - nature.com
Nuclear compartmentalization of active and inactive chromatin is thought to occur through
microphase separation mediated by interactions between loci of similar type. The nature and …

Genome organization and DNA accessibility control antigenic variation in trypanosomes

LSM Müller, RO Cosentino, KU Förstner, J Guizetti… - Nature, 2018 - nature.com
Many evolutionarily distant pathogenic organisms have evolved similar survival strategies to
evade the immune responses of their hosts. These include antigenic variation, through …