Phylogenomic approaches to detecting and characterizing introgression

MS Hibbins, MW Hahn - Genetics, 2022 - academic.oup.com
Phylogenomics has revealed the remarkable frequency with which introgression occurs
across the tree of life. These discoveries have been enabled by the rapid growth of methods …

Host–parasite co-evolution and its genomic signature

D Ebert, PD Fields - Nature Reviews Genetics, 2020 - nature.com
Studies in diverse biological systems have indicated that host–parasite co-evolution is
responsible for the extraordinary genetic diversity seen in some genomic regions, such as …

Cycles of satellite and transposon evolution in Arabidopsis centromeres

P Wlodzimierz, FA Rabanal, R Burns, M Naish… - Nature, 2023 - nature.com
Centromeres are critical for cell division, loading CENH3 or CENPA histone variant
nucleosomes, directing kinetochore formation and allowing chromosome segregation …

[HTML][HTML] A species-wide inventory of NLR genes and alleles in Arabidopsis thaliana

AL Van de Weyer, F Monteiro, OJ Furzer, MT Nishimura… - Cell, 2019 - cell.com
Infectious disease is both a major force of selection in nature and a prime cause of yield loss
in agriculture. In plants, disease resistance is often conferred by nucleotide-binding leucine …

Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.)

Q Qiao, PP Edger, L Xue, L Qiong… - Proceedings of the …, 2021 - National Acad Sciences
Strawberry (Fragaria spp.) has emerged as a model system for various fundamental and
applied research in recent years. In total, the genomes of five different species have been …

CeNDR, the Caenorhabditis elegans natural diversity resource

DE Cook, S Zdraljevic, JP Roberts… - Nucleic acids …, 2017 - academic.oup.com
Studies in model organisms have yielded considerable insights into the etiology of disease
and our understanding of evolutionary processes. Caenorhabditis elegans is among the …

Concerted genomic and epigenomic changes accompany stabilization of Arabidopsis allopolyploids

X Jiang, Q Song, W Ye, ZJ Chen - Nature Ecology & Evolution, 2021 - nature.com
During evolution successful allopolyploids must overcome 'genome shock'between
hybridizing species but the underlying process remains elusive. Here, we report concerted …

Gradual evolution of allopolyploidy in Arabidopsis suecica

R Burns, T Mandáková, J Gunis… - Nature Ecology & …, 2021 - nature.com
Most diploid organisms have polyploid ancestors. The evolutionary process of
polyploidization is poorly understood but has frequently been conjectured to involve some …

Recovering signals of ghost archaic introgression in African populations

A Durvasula, S Sankararaman - Science Advances, 2020 - science.org
While introgression from Neanderthals and Denisovans has been documented in modern
humans outside Africa, the contribution of archaic hominins to the genetic variation of …

Ancestral hybridization facilitated species diversification in the Lake Malawi cichlid fish adaptive radiation

H Svardal, FX Quah, M Malinsky… - Molecular biology …, 2020 - academic.oup.com
The adaptive radiation of cichlid fishes in East African Lake Malawi encompasses over 500
species that are believed to have evolved within the last 800,000 years from a common …