Orthologs, paralogs, and evolutionary genomics

EV Koonin - Annu. Rev. Genet., 2005 - annualreviews.org
Orthologs and paralogs are two fundamentally different types of homologous genes that
evolved, respectively, by vertical descent from a single ancestral gene and by duplication …

Roles of heat-shock proteins in innate and adaptive immunity

P Srivastava - Nature reviews immunology, 2002 - nature.com
Heat-shock proteins (HSPs) are the most abundant and ubiquitous soluble intracellular
proteins. In single-cell organisms, invertebrates and vertebrates, they perform a multitude of …

Bacteriophage T4 genome

ES Miller, E Kutter, G Mosig, F Arisaka… - Microbiology and …, 2003 - Am Soc Microbiol
Phage T4 has provided countless contributions to the paradigms of genetics and
biochemistry. Its complete genome sequence of 168,903 bp encodes about 300 gene …

DNA replication and transcription in mammalian mitochondria

M Falkenberg, NG Larsson… - Annu. Rev. Biochem., 2007 - annualreviews.org
The mitochondrion was originally a free-living prokaryotic organism, which explains the
presence of a compact mammalian mitochondrial DNA (mtDNA) in contempory mammalian …

SSB as an organizer/mobilizer of genome maintenance complexes

RD Shereda, AG Kozlov, TM Lohman… - Critical reviews in …, 2008 - Taylor & Francis
When duplex DNA is altered in almost any way (replicated, recombined, or repaired), single
strands of DNA are usually intermediates, and single-stranded DNA binding (SSB) proteins …

Residence time of receptor− ligand complexes and its effect on biological function

PJ Tummino, RA Copeland - Biochemistry, 2008 - ACS Publications
The formation and duration of binary receptor− ligand complexes are fundamental to many
physiologic processes. Most often, the effectiveness of interaction between a receptor and its …

Reconstitution of a minimal mtDNA replisome in vitro

JA Korhonen, XH Pham, M Pellegrini… - The EMBO …, 2004 - embopress.org
We here reconstitute a minimal mammalian mitochondrial DNA (mtDNA) replisome in vitro.
The mtDNA polymerase (POLγ) cannot use double‐stranded DNA (dsDNA) as template for …

Cellular DNA replicases: components and dynamics at the replication fork

A Johnson, M O'Donnell - Annu. Rev. Biochem., 2005 - annualreviews.org
▪ Abstract Chromosomal DNA replicases are multicomponent machines that have evolved
clever strategies to perform their function. Although the structure of DNA is elegant in its …

Epoxidation of polybutadiene by a topologically linked catalyst

P Thordarson, EJA Bijsterveld, AE Rowan, RJM Nolte - Nature, 2003 - nature.com
Nature has evolved complex enzyme architectures that facilitate the synthesis and
manipulation of the biopolymers DNA and RNA, including enzymes capable of attaching to …

A novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro

Y Wang, DE Prosen, L Mei, JC Sullivan… - Nucleic acids …, 2004 - academic.oup.com
Mechanisms that allow replicative DNA polymerases to attain high processivity are often
specific to a given polymerase and cannot be generalized to others. Here we report a …