Applications of next-generation sequencing in fisheries research: A review
The rapid advancement and decreasing costs of next-generation sequencing (NGS)
technologies have revolutionized the field of genomics and beyond. NGS has led to …
technologies have revolutionized the field of genomics and beyond. NGS has led to …
Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches
MTW Ebbert, ME Wadsworth, LA Staley, KL Hoyt… - BMC …, 2016 - Springer
Background Analyzing next-generation sequencing data is difficult because datasets are
large, second generation sequencing platforms have high error rates, and because each …
large, second generation sequencing platforms have high error rates, and because each …
Genomic tools for new insights to variation, adaptation, and evolution in the salmonid fishes: a perspective for charr
KR Elmer - Hydrobiologia, 2016 - Springer
The past few years have seen an absolute revolution in genomic technologies and their
potential applications to ecology and evolutionary biology research. Such advances open …
potential applications to ecology and evolutionary biology research. Such advances open …
Characterization of the rainbow trout spleen transcriptome and identification of immune-related genes
Resistance against diseases affects profitability of rainbow trout. Limited information is
available about functions and mechanisms of teleost immune pathways. Immunogenomics …
available about functions and mechanisms of teleost immune pathways. Immunogenomics …
De Novo SNP Discovery in the Scandinavian Brown Bear (Ursus arctos)
Information about relatedness between individuals in wild populations is advantageous
when studying evolutionary, behavioural and ecological processes. Genomic data can be …
when studying evolutionary, behavioural and ecological processes. Genomic data can be …
Association between myostatin gene (MSTN-1) polymorphism and growth traits in domesticated rainbow trout (Oncorhynchus mykiss)
In this study, the polymorphism of myostatin gene (MSTN-1) as a candidate gene for
quantitative traits was analyzed in the rainbow trout (Oncorhynchus mykiss). The association …
quantitative traits was analyzed in the rainbow trout (Oncorhynchus mykiss). The association …
Association between expression levels and growth trait-related SNPs located in promoters of the MC4R and MSTN genes in Spinibarbus hollandi
Y Yang, Z Lan, H Shu, H Zhou, X Jiang, L Hou, P Gu - Genes & genomics, 2018 - Springer
Abstract Melanocortin 4 receptor:(MC4R) and Myostatin (MSTN) are two important growth
trait-related genes in animals. In this study, we showed that two SNPs, MC4R-719A> G and …
trait-related genes in animals. In this study, we showed that two SNPs, MC4R-719A> G and …
Second generation physical and linkage maps of yellowtail (Seriola quinqueradiata) and comparison of synteny with four model fish
J Aoki, W Kai, Y Kawabata, A Ozaki, K Yoshida… - Bmc Genomics, 2015 - Springer
Background Physical and linkage maps are important aids for the assembly of genome
sequences, comparative analyses of synteny, and to search for candidate genes by …
sequences, comparative analyses of synteny, and to search for candidate genes by …
Using de novo transcriptomes to decipher the relationships in cutthroat trout subspecies (Oncorhynchus clarkii)
AL Kokkonen, PC Searle, DK Shiozawa… - Evolutionary …, 2024 - Wiley Online Library
For almost 200 years, the taxonomy of cutthroat trout (Oncorhynchus clarkii), a salmonid
native to Western North America, has been in flux as ichthyologists and fisheries biologists …
native to Western North America, has been in flux as ichthyologists and fisheries biologists …
[PDF][PDF] Trout and char: taxonomy, systematics, and phylogeography
The geographic domain of trout and char is vast. Their native distributions span all
continents in the Northern Hemisphere, including the region of North Africa. Most species of …
continents in the Northern Hemisphere, including the region of North Africa. Most species of …