Sequence-encoded self-assembly of multiple-nanocomponent arrays by 2D DNA scaffolding

YY Pinto, JD Le, NC Seeman, K Musier-Forsyth… - Nano Letters, 2005 - ACS Publications
Regular 2D arrays of multiple types of nanocomponents were constructed by self-assembly
to DNA scaffolding with alternating rows of sequence-encoded hybridization sites. Different …

Specific RNA self-assembly with minimal paranemic motifs

KA Afonin, DJ Cieply, NB Leontis - Journal of the American …, 2008 - ACS Publications
The paranemic crossover (PX) is a motif for assembling two nucleic acid molecules using
Watson− Crick (WC) basepairing without unfolding preformed secondary structure in the …

Accurate length control of supramolecular oligomerization: Vernier assemblies

CA Hunter, S Tomas - Journal of the American Chemical Society, 2006 - ACS Publications
Linear oligomeric supramolecular assemblies of defined length have been generated using
the Vernier principle. Two molecules, containing a different number (n and m) of mutually …

Controlled spacing of cationic gold nanoparticles by nanocrown RNA

AY Koyfman, G Braun, S Magonov… - Journal of the …, 2005 - ACS Publications
Using atomic force microscopy, we describe the linear arrangement of cationic gold
nanoparticles directed by programmable self-assembling RNA ladders and demonstrate that …

Reducing facet nucleation during algorithmic self-assembly

HL Chen, R Schulman, A Goel, E Winfree - Nano Letters, 2007 - ACS Publications
Algorithmic self-assembly, a generalization of crystal growth, has been proposed as a
mechanism for bottom-up fabrication of complex nanostructures and autonomous DNA …

Construction and Characterization of a Gold Nanoparticle Wire Assembled Using Mg2+-Dependent RNA−RNA Interactions

AD Bates, BP Callen, JM Cooper, R Cosstick… - Nano …, 2006 - ACS Publications
Magnesium-ion-mediated RNA− RNA loop− receptor interactions, in conjunction with gold
nanoparticles derivatized with DNA, have been used to make self-assembled nanowires. A …

An efficient thermally induced RNA conformational switch as a framework for the functionalization of RNA nanostructures

X Li, S Horiya, K Harada - Journal of the American Chemical …, 2006 - ACS Publications
RNA offers a variety of interactions and dynamic conformational switches not available with
DNA that may be exploited for the construction of nanomolecular structures. Here, we show …

Assembly of Protein− RNA Complexes Using Natural RNA and Mutant Forms of an RNA Cytosine Methyltransferase

KL Redman - Biomacromolecules, 2006 - ACS Publications
This work reveals that mutant forms of RNA methyltransferases that form 5-methylcytosine
(m5C) have characteristics that may make them useful for biomacromolecular assembly. The …

A novel configurational-bias Monte Carlo method for lattice polymers: application to molecules with multicyclic architectures

CRA Abreu, FA Escobedo - Macromolecules, 2005 - ACS Publications
A new configurational-bias Monte Carlo (CBMC) method is developed for lattice polymer
simulation. In contrast to usual approaches, no particular structure is assumed a priori …