To understand the cell, we need to determine the macromolecular assembly structures, which may consist of tens to hundreds of components. First, we review the varied …
F Förster, B Webb, KA Krukenberg, H Tsuruta… - Journal of molecular …, 2008 - Elsevier
A major challenge in structural biology is to determine the configuration of domains and proteins in multidomain proteins and assemblies, respectively. All available data should be …
Computational modeling can provide a wealth of insight into how energy flow in proteins mediates protein function. Computational methods can also address fundamental questions …
We present a coarse residue-based computational method to rapidly compute the solution scattering profile from a protein with dynamical fluctuations. The method is built upon a …
M Lu, B Poon, J Ma - Journal of chemical theory and computation, 2006 - ACS Publications
In this paper, we report a new method for coarse-grained elastic normal-mode analysis. The purpose is to overcome a long-standing problem in the conventional analysis called the tip …
AP Latham, B Zhang - The Journal of Physical Chemistry B, 2019 - ACS Publications
Small-angle X-ray scattering (SAXS) experiments provide valuable structural data for biomolecules in solution. We develop a highly efficient maximum entropy approach to fit …
Y Wu, M Lu, M Chen, J Li, J Ma - Protein science, 2007 - Wiley Online Library
In this paper, we report a knowledge‐based potential function, named the OPUS‐Ca potential, that requires only Cα positions as input. The contributions from other atomic …
SE Tsutakawa, GL Hura, KA Frankel, PK Cooper… - Journal of structural …, 2007 - Elsevier
In the last few years, SAXS of biological materials has been rapidly evolving and promises to move structural analysis to a new level. Recent innovations in SAXS data analysis allow ab …
Small-angle x-ray scattering (SAXS) is a powerful technique widely used to explore conformational states and transitions of biomolecular assemblies in solution. For accurate …