Transcription-mediated replication hindrance: a major driver of genome instability

B Gómez-González, A Aguilera - Genes & development, 2019 - genesdev.cshlp.org
Genome replication involves dealing with obstacles that can result from DNA damage but
also from chromatin alterations, topological stress, tightly bound proteins or non-B DNA …

Replication fork stalling at natural impediments

EV Mirkin, SM Mirkin - Microbiology and molecular biology …, 2007 - Am Soc Microbiol
Accurate and complete replication of the genome in every cell division is a prerequisite of
genomic stability. Thus, both prokaryotic and eukaryotic replication forks are extremely …

Expansion and contraction of ribosomal DNA repeats in Saccharomyces cerevisiae: requirement of replication fork blocking (Fob1) protein and the role of RNA …

T Kobayashi, DJ Heck, M Nomura… - Genes & …, 1998 - genesdev.cshlp.org
Saccharomyces cerevisiae carries∼ 150 copies of rDNA in tandem repeats. It was found
that the absence of an essential subunit of RNA polymerase I (Pol I) in rpa135 deletion …

[HTML][HTML] Elimination of replication block protein Fob1 extends the life span of yeast mother cells

PA Defossez, R Prusty, M Kaeberlein, SJ Lin… - Molecular cell, 1999 - cell.com
A cause of aging in yeast is the accumulation of circular species of ribosomal DNA (rDNA)
arising from the 100–200 tandemly repeated copies in the genome. We show here that …

Conversion of topoisomerase I cleavage complexes on the leading strand of ribosomal DNA into 5′-phosphorylated DNA double-strand breaks by replication runoff

D Strumberg, AA Pilon, M Smith, R Hickey… - … and cellular biology, 2000 - Taylor & Francis
Topoisomerase I cleavage complexes can be induced by a variety of DNA damages and by
the anticancer drug camptothecin. We have developed a ligation-mediated PCR (LM-PCR) …

Impairment of replication fork progression mediates RNA polII transcription‐associated recombination

F Prado, A Aguilera - The EMBO journal, 2005 - embopress.org
Homologous recombination safeguards genome integrity, but it can also cause genome
instability of important consequences for cell proliferation and organism development …

Sequence-independent DNA binding and replication initiation by the human origin recognition complex

S Vashee, C Cvetic, W Lu, P Simancek… - Genes & …, 2003 - genesdev.cshlp.org
We report that a highly purified human origin recognition complex (HsORC) has intrinsic
DNA-binding activity, and that this activity is modestly stimulated by ATP. HsORC binds …

A yeast gene product, Fob1 protein, required for both replication fork blocking and recombinational hotspot activities

T Kobayashi, T Horiuchi - Genes to Cells, 1996 - Wiley Online Library
Background: In the rRNA gene cluster on the Saccharomyces cerevisiae chromosome XII, a
unique site that blocks progression of the replication fork exists in a single unit of the …

Coordination of replication and transcription along a Drosophila chromosome

DM MacAlpine, HK Rodríguez, SP Bell - Genes & development, 2004 - genesdev.cshlp.org
The mechanisms by which metazoan origins of DNA replication are defined, regulated, and
influenced by chromosomal events remain poorly understood. To gain insights into these …

SIR2 regulates recombination between different rDNA repeats, but not recombination within individual rRNA genes in yeast

T Kobayashi, T Horiuchi, P Tongaonkar, L Vu… - Cell, 2004 - cell.com
It is known that mutations in gene SIR2 increase and those in FOB1 decrease recombination
within rDNA repeats as assayed by marker loss or extrachromosomal rDNA circle formation …