Multi-atlas segmentation of biomedical images: a survey

JE Iglesias, MR Sabuncu - Medical image analysis, 2015 - Elsevier
Abstract Multi-atlas segmentation (MAS), first introduced and popularized by the pioneering
work of Rohlfing, et al.(2004), Klein, et al.(2005), and Heckemann, et al.(2006), is becoming …

MUSE: MUlti-atlas region Segmentation utilizing Ensembles of registration algorithms and parameters, and locally optimal atlas selection

J Doshi, G Erus, Y Ou, SM Resnick, RC Gur, RE Gur… - Neuroimage, 2016 - Elsevier
Atlas-based automated anatomical labeling is a fundamental tool in medical image
segmentation, as it defines regions of interest for subsequent analysis of structural and …

[HTML][HTML] Robust whole-brain segmentation: application to traumatic brain injury

C Ledig, RA Heckemann, A Hammers, JC Lopez… - Medical image …, 2015 - Elsevier
We propose a framework for the robust and fully-automatic segmentation of magnetic
resonance (MR) brain images called “Multi-Atlas Label Propagation with Expectation …

Non-local statistical label fusion for multi-atlas segmentation

AJ Asman, BA Landman - Medical image analysis, 2013 - Elsevier
Multi-atlas segmentation provides a general purpose, fully-automated approach for
transferring spatial information from an existing dataset (“atlases”) to a previously unseen …

A new fusion estimation method for multi-rate multi-sensor systems with missing measurements

M Kordestani, M Dehghani, B Moshiri, M Saif - Ieee Access, 2020 - ieeexplore.ieee.org
A new fusion strategy is introduced in this article to estimate state for multi-rate multi-sensor
systems with missing measurements. N sensors, which possess various sampling rates …

Formulating spatially varying performance in the statistical fusion framework

AJ Asman, BA Landman - IEEE transactions on medical …, 2012 - ieeexplore.ieee.org
To date, label fusion methods have primarily relied either on global [eg, simultaneous truth
and performance level estimation (STAPLE), globally weighted vote] or voxelwise (eg …

An empirical study into annotator agreement, ground truth estimation, and algorithm evaluation

TA Lampert, A Stumpf… - IEEE Transactions on …, 2016 - ieeexplore.ieee.org
Although agreement between the annotators who mark feature locations within images has
been studied in the past from a statistical viewpoint, little work has attempted to quantify the …

Semi-supervised learning and graph cuts for consensus based medical image segmentation

D Mahapatra - Pattern recognition, 2017 - Elsevier
Medical image segmentation requires consensus ground truth segmentations to be derived
from multiple expert annotations. A novel approach is proposed that obtains consensus …

A logarithmic opinion pool based STAPLE algorithm for the fusion of segmentations with associated reliability weights

A Akhondi-Asl, L Hoyte, ME Lockhart… - IEEE transactions on …, 2014 - ieeexplore.ieee.org
Pelvic floor dysfunction is common in women after childbirth and precise segmentation of
magnetic resonance images (MRI) of the pelvic floor may facilitate diagnosis and treatment …

Estimating a reference standard segmentation with spatially varying performance parameters: Local MAP STAPLE

O Commowick, A Akhondi-Asl… - IEEE transactions on …, 2012 - ieeexplore.ieee.org
We present a new algorithm, called local MAP STAPLE, to estimate from a set of multi-label
segmentations both a reference standard segmentation and spatially varying performance …