The genomic revolution and species delimitation in birds (and other organisms): Why phenotypes should not be overlooked

CD Cadena, F Zapata - The Auk, 2021 - academic.oup.com
Given the availability of genomic data to identify separately evolving groups of organisms,
many researchers establish species limits based on assessments of the extent of gene flow …

Systematics, biogeography, and diversification of Scytalopus tapaculos (Rhinocryptidae), an enigmatic radiation of Neotropical montane birds

CD Cadena, AM Cuervo, LN Céspedes, GA Bravo… - The Auk, 2020 - academic.oup.com
We studied the phylogeny, biogeography, and diversification of suboscine passerines in the
genus Scytalopus (Rhinocryptidae), a widespread, species-rich, and taxonomically …

Speciation and gene flow across an elevational gradient in New Guinea kingfishers

E Linck, BG Freeman… - Journal of Evolutionary …, 2020 - academic.oup.com
Closely related species with parapatric elevational ranges are ubiquitous in tropical
mountains worldwide. The gradient speciation hypothesis proposes that these series are the …

Integrative taxonomy reveals hidden diversity in the Catharus fuscater (Passeriformes: Turdidae) complex in Central and South America

MR Halley, TA Catanach, J Klicka… - Zoological Journal of …, 2023 - academic.oup.com
We assembled datasets of genetic(genomic ultraconserved elements[UCEs], mtDNA) and
phenotypic (morphology, voice) characters to address species limits and taxonomy in the …

The role of biogeographical barriers on the historical dynamics of passerine birds with a circum‐Amazonian distribution

SD Bolívar‐Leguizamón, F Bocalini… - Ecology and …, 2024 - Wiley Online Library
Common distributional patterns have provided the foundations of our knowledge of
Neotropical biogeography. A distinctive pattern is the “circum‐Amazonian distribution” …

Conservative plumage masks extraordinary phylogenetic diversity in the Grallaria rufula (Rufous Antpitta) complex of the humid Andes

RT Chesser, ML Isler, AM Cuervo, CD Cadena… - The Auk, 2020 - academic.oup.com
The Grallaria rufula complex is currently considered to consist of 2 species, G. rufula (Rufous
Antpitta) and G. blakei (Chestnut Antpitta). However, it has been suggested that the complex …

Biogeography of a neotropical songbird radiation reveals similar diversification dynamics between montane and lowland clades

N Buainain, M Ferreira, JE Avendaño… - Journal of …, 2022 - Wiley Online Library
Aim Continental evolutionary radiations provide opportunities to understand how landscape
evolution and biotic factors interact to generate species diversity. Additionally …

Distinguishing genomic homogenization from parapatric speciation in an elevationally replacing pair of Ramphocelus tanagers

VE Luzuriaga‐Aveiga, M Ugarte, JT Weir - Molecular Ecology, 2021 - Wiley Online Library
Geographically connected species pairs with weakly differentiated genomes could either
represent cases of genomic homogenization in progress or of incipient parapatric …

Origin of elevational replacements in a clade of nearly flightless birds: most diversity in tropical mountains accumulates via secondary contact following allopatric …

CD Cadena, LN Céspedes - Neotropical diversification: Patterns and …, 2020 - Springer
Tropical mountains are biodiversity hotspots. In particular, mountains in the Neotropics
exhibit remarkable beta diversity reflecting species turnover along elevational gradients …

Museum genomics reveals the speciation history of Dendrortyx wood-partridges in the Mesoamerican highlands

WLE Tsai, C Mota-Vargas, O Rojas-Soto… - Molecular Phylogenetics …, 2019 - Elsevier
Natural history collections are increasingly valued as genomic resources. Their specimens
reflect the combined efforts of collectors and curators over hundreds of years. For many rare …