Finding the genomic basis of local adaptation: pitfalls, practical solutions, and future directions

S Hoban, JL Kelley, KE Lotterhos… - The American …, 2016 - journals.uchicago.edu
Uncovering the genetic and evolutionary basis of local adaptation is a major focus of
evolutionary biology. The recent development of cost-effective methods for obtaining high …

Genomics and the future of conservation genetics

FW Allendorf, PA Hohenlohe, G Luikart - Nature reviews genetics, 2010 - nature.com
We will soon have complete genome sequences from thousands of species, as well as from
many individuals within species. This coming explosion of information will transform our …

Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests

KE Lotterhos, MC Whitlock - Molecular ecology, 2014 - Wiley Online Library
FST outlier tests are a potentially powerful way to detect genetic loci under spatially
divergent selection. Unfortunately, the extent to which these tests are robust to …

Harnessing crop wild diversity for climate change adaptation

AJ Cortés, F López-Hernández - Genes, 2021 - mdpi.com
Warming and drought are reducing global crop production with a potential to substantially
worsen global malnutrition. As with the green revolution in the last century, plant genetics …

Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation

SP Flanagan, BR Forester, EK Latch… - Evolutionary …, 2018 - Wiley Online Library
Identifying and monitoring locally adaptive genetic variation can have direct utility for
conserving species at risk, especially when management may include actions such as …

The Genome 10K Project: a way forward

KP Koepfli, B Paten… - Annu. Rev. Anim …, 2015 - annualreviews.org
The Genome 10K Project was established in 2009 by a consortium of biologists and
genome scientists determined to facilitate the sequencing and analysis of the complete …

The search for loci under selection: trends, biases and progress

CW Ahrens, PD Rymer, A Stow, J Bragg… - Molecular …, 2018 - Wiley Online Library
Detecting genetic variants under selection using FST outlier analysis (OA) and
environmental association analyses (EAAs) are popular approaches that provide insight into …

Deep reefs are not universal refuges: reseeding potential varies among coral species

P Bongaerts, C Riginos, R Brunner, N Englebert… - Science …, 2017 - science.org
Deep coral reefs (that is, mesophotic coral ecosystems) can act as refuges against major
disturbances affecting shallow reefs. It has been proposed that, through the provision of …

Estimation of census and effective population sizes: the increasing usefulness of DNA-based approaches

G Luikart, N Ryman, DA Tallmon, MK Schwartz… - Conservation …, 2010 - Springer
Population census size (NC) and effective population sizes (N e) are two crucial parameters
that influence population viability, wildlife management decisions, and conservation …

Towards a whole‐genome sequence for rye (Secale cereale L.)

E Bauer, T Schmutzer, I Barilar, M Mascher… - The Plant …, 2017 - Wiley Online Library
We report on a whole‐genome draft sequence of rye (Secale cereale L.). Rye is a diploid
Triticeae species closely related to wheat and barley, and an important crop for food and …