Computational methods in drug discovery

G Sliwoski, S Kothiwale, J Meiler, EW Lowe Jr… - Pharmacological …, 2014 - Elsevier
Computer-aided drug discovery/design methods have played a major role in the
development of therapeutically important small molecules for over three decades. These …

Computational methods in developing quantitative structure-activity relationships (QSAR): a review

AZ Dudek, T Arodz, J Gálvez - Combinatorial chemistry & high …, 2006 - ingentaconnect.com
Virtual filtering and screening of combinatorial libraries have recently gained attention as
methods complementing the high-throughput screening and combinatorial chemistry. These …

[图书][B] 3D QSAR in drug design: volume 1: theory methods and applications

H Kubinyi - 1993 - books.google.com
Progress in medicinal chemistry and in drug design depends on our ability to understand the
interactions of drugs with their biological targets. Classical QSAR studies describe biological …

Machine Learning Methods for Property Prediction in Chemoinformatics: Quo Vadis?

A Varnek, I Baskin - Journal of chemical information and modeling, 2012 - ACS Publications
This paper is focused on modern approaches to machine learning, most of which are as yet
used infrequently or not at all in chemoinformatics. Machine learning methods are …

Characterization of structure–antioxidant activity relationship of peptides in free radical systems using QSAR models: Key sequence positions and their amino acid …

YW Li, B Li - Journal of Theoretical Biology, 2013 - Elsevier
Antioxidative peptides have attracted increasing attention from researchers because of their
antioxidant properties as natural materials in functional food and for applications in …

The characterization of chemical structures using molecular properties. A survey

DJ Livingstone - Journal of chemical information and computer …, 2000 - ACS Publications
In a review of structure-property correlations in molecular design, 1 the relevance today of
what is arguably one of the earliest publications2 on QSAR was pointed out. In this paper …

A comparison of methods for modeling quantitative structure− activity relationships

JJ Sutherland, LA O'Brien… - Journal of Medicinal …, 2004 - ACS Publications
A large number of methods are available for modeling quantitative structure− activity
relationships (QSAR). We examine the predictive accuracy of several methods applied to …

Multi-dimensional QSAR in drug discovery

MA Lill - Drug Discovery Today, 2007 - Elsevier
Quantitative structure–activity relationships (QSAR) is an area of computational research
that builds virtual models to predict quantities such as the binding affinity or the toxic …

Substructure and whole molecule approaches for calculating log P

R Mannhold, H Van de Waterbeemd - Journal of Computer-Aided …, 2001 - Springer
Lipophilicity is a major determinant of pharmacokinetic and pharmacodynamic properties of
drug molecules. Correspondingly, there is great interest in medicinal chemistry in …

Developing anti-microbial peptide database version 1 to provide comprehensive and exhaustive resource of manually curated AMPs

RK Mondal, D Sen, A Arya, SK Samanta - Scientific Reports, 2023 - nature.com
Abstract Anti-Microbial Peptide Database version 1 (AMPDB v1) is a meticulously curated
resource that aims to address the limitations of existing databases in the field of …