Adaptive genetic traits in pelagic freshwater microbes

MC Chiriac, M Haber… - Environmental …, 2023 - Wiley Online Library
Pelagic microbes have adopted distinct strategies to inhabit the pelagial of lakes and
oceans and can be broadly categorized in two groups: free‐living, specialized oligotrophs …

Microbial ecology of the deep terrestrial subsurface

RC Beaver, JD Neufeld - The ISME Journal, 2024 - academic.oup.com
The terrestrial subsurface hosts microbial communities that, collectively, are predicted to
comprise as many microbial cells as global surface soils. Although initially thought to be …

Scientific novelty beyond the experiment

JE Hallsworth, Z Udaondo, C Pedrós‐Alió… - Microbial …, 2023 - Wiley Online Library
Practical experiments drive important scientific discoveries in biology, but theory‐based
research studies also contribute novel—sometimes paradigm‐changing—findings. Here, we …

Global patterns of diversity and metabolism of microbial communities in deep-sea hydrothermal vent deposits

Z Zhou, E St. John, K Anantharaman, AL Reysenbach - Microbiome, 2022 - Springer
Background When deep-sea hydrothermal fluids mix with cold oxygenated fluids, minerals
precipitate out of solution and form hydrothermal deposits. These actively venting deep-sea …

Symbiosis between Candidatus Patescibacteria and Archaea Discovered in Wastewater-Treating Bioreactors

K Kuroda, K Yamamoto, R Nakai, Y Hirakata, K Kubota… - MBio, 2022 - Am Soc Microbiol
Each prokaryotic domain, Bacteria and Archaea, contains a large and diverse group of
organisms characterized by their ultrasmall cell size and symbiotic lifestyles (potentially …

[HTML][HTML] Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle

Y Wang, LA Gallagher, PA Andrade, A Liu… - Cell, 2023 - cell.com
Patescibacteria, also known as the candidate phyla radiation (CPR), are a diverse group of
bacteria that constitute a disproportionately large fraction of microbial dark matter. Its few …

Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR

MC Chiriac, PA Bulzu, AS Andrei, Y Okazaki, S Nakano… - Microbiome, 2022 - Springer
Background The increased use of metagenomics and single-cell genomics led to the
discovery of organisms from phyla with no cultivated representatives and proposed new …

[HTML][HTML] Metabolic implications for predatory and parasitic bacterial lineages in activated sludge wastewater treatment systems

K Kuroda, S Tomita, H Kurashita, M Hatamoto… - Water Research X, 2023 - Elsevier
Deciphering unclear microbial interactions is key to improving biological wastewater
treatment processes. Microbial predation and parasitism in wastewater treatment …

Cell envelope diversity and evolution across the bacterial tree of life

A Hashimi, EI Tocheva - Nature Microbiology, 2024 - nature.com
The bacterial cell envelope is a complex multilayered structure conserved across all
bacterial phyla. It is categorized into two main types based on the number of membranes …

Metabolic potential of the superphylum Patescibacteria reconstructed from activated sludge samples from a municipal wastewater treatment plant

N Fujii, K Kuroda, T Narihiro, Y Aoi, N Ozaki… - Microbes and …, 2022 - jstage.jst.go.jp
Patescibacteria are widely distributed in various environments and often detected in
activated sludge. However, limited information is currently available on their phylogeny …