Mechanisms of enhancer action: the known and the unknown

A Panigrahi, BW O'Malley - Genome biology, 2021 - Springer
Differential gene expression mechanisms ensure cellular differentiation and plasticity to
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …

Enhancer RNAs are an important regulatory layer of the epigenome

V Sartorelli, SM Lauberth - Nature structural & molecular biology, 2020 - nature.com
Noncoding RNAs (ncRNAs) direct a remarkable number of diverse functions in development
and disease through their regulation of transcription, RNA processing and translation …

Cell-type-directed design of synthetic enhancers

II Taskiran, KI Spanier, H Dickmänken, N Kempynck… - Nature, 2024 - nature.com
Transcriptional enhancers act as docking stations for combinations of transcription factors
and thereby regulate spatiotemporal activation of their target genes. It has been a long …

Enhancer evolution across 20 mammalian species

D Villar, C Berthelot, S Aldridge, TF Rayner, M Lukk… - Cell, 2015 - cell.com
The mammalian radiation has corresponded with rapid changes in noncoding regions of the
genome, but we lack a comprehensive understanding of regulatory evolution in mammals …

Deep conservation of the enhancer regulatory code in animals

ES Wong, D Zheng, SZ Tan, NI Bower, V Garside… - Science, 2020 - science.org
INTRODUCTION In animals, gene regulatory networks specify cell identity in space and
time. Transcription of genes in these networks is modulated by a class of cis-regulatory …

Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence

PJ Wittkopp, G Kalay - Nature Reviews Genetics, 2012 - nature.com
Cis-regulatory sequences, such as enhancers and promoters, control development and
physiology by regulating gene expression. Mutations that affect the function of these …

[HTML][HTML] Functional and mechanistic diversity of distal transcription enhancers

M Bulger, M Groudine - Cell, 2011 - cell.com
Biological differences among metazoans and between cell types in a given organism arise
in large part due to differences in gene expression patterns. Gene-distal enhancers are key …

Evolutionary changes in promoter and enhancer activity during human corticogenesis

SK Reilly, J Yin, AE Ayoub, D Emera, J Leng, J Cotney… - Science, 2015 - science.org
Human higher cognition is attributed to the evolutionary expansion and elaboration of the
human cerebral cortex. However, the genetic mechanisms contributing to these …

Evolution of gene regulatory networks controlling body plan development

IS Peter, EH Davidson - Cell, 2011 - cell.com
Evolutionary change in animal morphology results from alteration of the functional
organization of the gene regulatory networks (GRNs) that control development of the body …

Gene regulation and speciation

KL Mack, MW Nachman - Trends in Genetics, 2017 - cell.com
Understanding the genetic architecture of speciation is a major goal in evolutionary biology.
Hybrid dysfunction is thought to arise most commonly through negative interactions between …