A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response

Y Luo, M Kanai, W Choi, X Li, S Sakaue, K Yamamoto… - Nature …, 2021 - nature.com
Fine-mapping to plausible causal variation may be more effective in multi-ancestry cohorts,
particularly in the MHC, which has population-specific structure. To enable such studies, we …

Immunogenetics in stem cell donor registry work: The DKMS example (Part 1)

AH Schmidt, J Sauter, DM Baier, J Daiss… - International Journal …, 2020 - Wiley Online Library
Currently, stem cell donor registries include more than 35 million potential donors worldwide
to provide HLA‐matched stem cell products for patients in need of an unrelated donor …

[HTML][HTML] Frequencies of gene variant CCR5-Δ32 in 87 countries based on next-generation sequencing of 1.3 million individuals sampled from 3 national DKMS donor …

UV Solloch, K Lang, V Lange, I Böhme, AH Schmidt… - Human immunology, 2017 - Elsevier
Homozygous carriers of CCR5-Δ32, a gene variant of CC-type chemokine receptor 5
(CCR5), are highly resistant to infections with human immunodeficiency virus type 1 (HIV-1) …

Alterations in SARS-CoV-2 Omicron and Delta peptides presentation by HLA molecules

S Nersisyan, A Zhiyanov, M Zakharova, I Ishina… - PeerJ, 2022 - peerj.com
The T-cell immune response is a major determinant of effective SARS-CoV-2 clearance.
Here, using the recently developed T-CoV bioinformatics pipeline (https://t-cov. hse. ru) we …

Tools for building, analyzing and evaluating HLA haplotypes from families

K Osoegawa, SJ Mack, M Prestegaard… - Human immunology, 2019 - Elsevier
The highly polymorphic classical human leukocyte antigen (HLA) genes display strong
linkage disequilibrium (LD) that results in conserved multi-locus haplotypes. For unrelated …

An NGS‐based HLA haplotype analysis and population comparison between two cities in Rio de Janeiro, Brazil

R Vianna, D Secco, L Hanhoerderster, J Motta… - HLA, 2020 - Wiley Online Library
HLA genes can exhibit extensive variations in frequency, especially in highly admixed
populations, such as that of Brazil. In this study, we demonstrated NGS‐based HLA typing in …

High-resolution characterization of allelic and haplotypic HLA frequency distribution in a Spanish population using high-throughput next-generation sequencing

G Montero-Martín, KC Mallempati, S Gangavarapu… - Human immunology, 2019 - Elsevier
Next-generation sequencing (NGS) at the HLA-A,-B,-C,-DPA1,-DPB1,-DQA1,-DQB1,-DRB1
and-DRB3/4/5 loci was performed on 282 healthy unrelated individuals from different major …

5 years DKMS Chile: approach, results and impact of the first unrelated stem cell donor center in Chile

F Barriga, UV Solloch, A Giani, J Palma… - Frontiers in …, 2023 - frontiersin.org
Introduction Allogeneic hematopoietic stem cell transplantation (allo-HSCT) is performed
worldwide to treat blood cancer and other life-threatening blood disorders. As successful …

HLA allele and haplotype frequencies of registered stem cell donors in Chile

UV Solloch, AS Giani, MI Pattillo Garnham… - Frontiers in …, 2023 - frontiersin.org
Patients in need of hematopoietic stem cell transplantation often rely on unrelated stem cell
donors matched in certain human leukocyte antigen (HLA) genes. Donor search is …

PGG.MHC: toward understanding the diversity of major histocompatibility complexes in human populations

X Zhao, S Ma, B Wang, X Jiang… - Nucleic Acids …, 2023 - academic.oup.com
The human leukocyte antigen (HLA) system, or the human version of the major
histocompatibility complex (MHC), is known for its extreme polymorphic nature and high …