Centralized and Federated Models for the Analysis of Clinical Data

R Li, JD Romano, Y Chen… - Annual Review of …, 2024 - annualreviews.org
The progress of precision medicine research hinges on the gathering and analysis of
extensive and diverse clinical datasets. With the continued expansion of modalities, scales …

Amino acid influx via LAT1 regulates iron demand and sensitivity to PPMX-T003 of aggressive natural killer cell leukemia

R Yanagiya, Y Miyatake, N Watanabe, T Shimizu… - Leukemia, 2024 - nature.com
Aggressive natural killer cell leukemia (ANKL) is a rare hematological malignancy with a
fulminant clinical course. Our previous study revealed that ANKL cells proliferate …

aenmd: annotating escape from nonsense-mediated decay for transcripts with protein-truncating variants

J Klonowski, Q Liang, Z Coban-Akdemir, C Lo… - …, 2023 - academic.oup.com
DNA changes that cause premature termination codons (PTCs) represent a large fraction of
clinically relevant pathogenic genomic variation. Typically, PTCs induce transcript …

LAFEM: A Scoring Model to Evaluate Functional Landscape of Lysine Acetylome

JZ Liang, DH Li, YC Xiao, FJ Shi, T Zhong… - Molecular & Cellular …, 2024 - ASBMB
Protein lysine acetylation is a critical post-translation modification (PTM) involved in a wide
range of biological processes. To date, about 20,000 acetylation sites of Homo sapiens were …

Validation of deep amplicon sequencing of Dicrocoelium in small ruminants from Northern regions of Pakistan

MA Khan, K Afshan, S Firasat, M Abbas, ND Sargison… - Plos one, 2024 - journals.plos.org
Dicrocoelium lancet flukes cause significant production loss in ruminant livestock. Although
co-infection with multiple Dicrocoelium species within a host is common, techniques for …

Modular Splicing is Linked to Evolution in the Synapse-Specificity Molecule Kirrel3

D Traenkner, O Shennib, A Johnson, A Weinbrom… - Eneuro, 2023 - eneuro.org
Kirrel3 is a cell-adhesion molecule that instructs the formation of specific synapses during
brain development in mouse and Kirrel3 variants may be risk factors for autism and …

Sin3a associated protein 130 kDa, sap130, plays an evolutionary conserved role in zebrafish heart development

RA DeMoya, RE Forman-Rubinsky… - Frontiers in Cell and …, 2023 - frontiersin.org
Hypoplastic left heart syndrome (HLHS) is a congenital heart disease where the left ventricle
is reduced in size. A forward genetic screen in mice identified SIN3A associated protein 130 …

[HTML][HTML] Protocol for fast clonal family inference and analysis from large-scale B cell receptor repertoire sequencing data

K Wang, L Cai, H Wang, S Shan, X Hu, J Zhang - STAR protocols, 2024 - Elsevier
The expeditious identification and comprehensive analysis of clonal families from extensive
B cell receptor (BCR) repertoire sequencing data are imperative for elucidating the …

mRNA stability fine tunes gene expression in the developing cortex to control neurogenesis

L Serdar, J Egol, B Lackford, B Bennett, G Hu, D Silver - bioRxiv, 2024 - biorxiv.org
RNA expression levels are controlled by the complementary processes of synthesis and
degradation. Although mis-regulation of RNA turnover is linked to neurodevelopmental …

Singular Odorant Receptor Expression Orchestrated by Promoter Activation Specificity in Apis Mellifera Olfactory Sensory Neurons

J Xu, W Zhang, Y Nie, Y Li, Y Xu, T Xu, P Shi, F Liu… - bioRxiv, 2024 - biorxiv.org
Honeybee, positioned as an outgroup of flies and mosquitos, have exhibited intriguing
duplications and expansions of OR genes in genomic studies. However, little is known about …