Theory and simulation of the ultrafast double-bond isomerization of biological chromophores

S Gozem, HL Luk, I Schapiro, M Olivucci - Chemical reviews, 2017 - ACS Publications
Ultrafast processes in light-absorbing proteins have been implicated in the primary step in
the light-to-energy conversion and the initialization of photoresponsive biological functions …

Intrinsic reaction coordinate: Calculation, bifurcation, and automated search

S Maeda, Y Harabuchi, Y Ono… - … Journal of Quantum …, 2015 - Wiley Online Library
The intrinsic reaction coordinate (IRC) approach has been used extensively in quantum
chemical analysis and prediction of the mechanism of chemical reactions. The IRC gives a …

Proton transfer in solution: Molecular dynamics with quantum transitions

S Hammes‐Schiffer, JC Tully - The Journal of chemical physics, 1994 - pubs.aip.org
We apply" molecular dynamics with quantum transitions"(MDQT), a surface-hopping method
previously used only for electronic transitions, to proton transfer in solution, where the …

A general method to describe intersystem crossing dynamics in trajectory surface hopping

S Mai, P Marquetand, L González - International Journal of …, 2015 - Wiley Online Library
Intersystem crossing is a radiationless process that can take place in a molecule irradiated
by UV‐Vis light, thereby playing an important role in many environmental, biological and …

Ab Initio Quantum Molecular Dynamics

M Ben‐Nun, TJ Martínez - Advances in chemical physics, 2002 - Wiley Online Library
In this chapter, the authors discuss their recent development of the ab initio multiple
spawning (AIMS) method which solves the elecronic and nuclear Schrödinger equations …

An overview of nonadiabatic dynamics simulations methods, with focus on the direct approach versus the fitting of potential energy surfaces

M Persico, G Granucci - Theoretical Chemistry Accounts, 2014 - Springer
We review state-of-the-art nonadiabatic molecular dynamics methods, with focus on the
comparison of two general strategies: the “direct” one, in which the potential energy surfaces …

Ring-polymer instanton tunneling splittings of tropolone and isotopomers using a δ-machine learned ccsd (t) potential: Theory and experiment shake hands

A Nandi, G Laude, SS Khire, ND Gurav… - Journal of the …, 2023 - ACS Publications
Tropolone, a 15-atom cyclic molecule, has received much interest both experimentally and
theoretically due to its H-transfer tunneling dynamics. An accurate theoretical description is …

Full-dimensional quantum calculations of ground-state tunneling splitting of malonaldehyde using an accurate ab initio potential energy surface

Y Wang, BJ Braams, JM Bowman, S Carter… - The Journal of chemical …, 2008 - pubs.aip.org
Quantum calculations of the ground vibrational state tunneling splitting of H-atom and D-
atom transfer in malonaldehyde are performed on a full-dimensional ab initio potential …

Proton transfer in hydrogen‐bonded acid–base complexes in polar solvents

A Staib, D Borgis, JT Hynes - The Journal of chemical physics, 1995 - pubs.aip.org
A theoretical approach exploiting molecular dynamics simulations to treat adiabatic proton
transfer between an acid AH and a base B in a polar, aprotic solvent is presented. The …

Proton transfer in the ground and lowest excited states of malonaldehyde: A comparative density functional and post‐Hartree–Fock study

V Barone, C Adamo - The Journal of chemical physics, 1996 - pubs.aip.org
Intramolecular proton transfer in the ground and the lowest two excited electronic states of
malonaldehyde has been investigated by using density functional and post‐Hartree–Fock …