Cucurbitaceae genome evolution, gene function, and molecular breeding

L Ma, Q Wang, Y Zheng, J Guo, S Yuan… - Horticulture …, 2022 - academic.oup.com
Cucurbitaceae is one of the most genetically diverse plant families in the world. Many of
them are important vegetables or medicinal plants and are widely distributed worldwide. The …

[HTML][HTML] To be or not to be? Are reactive oxygen species, antioxidants, and stress signalling universal determinants of life or death?

M Szechyńska-Hebda, RZ Ghalami, M Kamran… - Cells, 2022 - mdpi.com
In the environmental and organism context, oxidative stress is complex and unavoidable.
Organisms simultaneously cope with a various combination of stress factors in natural …

BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database

T Brůna, KJ Hoff, A Lomsadze, M Stanke… - NAR genomics and …, 2021 - academic.oup.com
The task of eukaryotic genome annotation remains challenging. Only a few genomes could
serve as standards of annotation achieved through a tremendous investment of human …

[HTML][HTML] Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis

A Rai, H Hirakawa, R Nakabayashi, S Kikuchi… - Nature …, 2021 - nature.com
Plant genomes remain highly fragmented and are often characterized by hundreds to
thousands of assembly gaps. Here, we report chromosome-level reference and phased …

[PDF][PDF] A chromosome-scale genome assembly of cucumber (Cucumis sativus L.)

Q Li, H Li, WU Huang, Y Xu, Q Zhou, S Wang… - …, 2019 - academic.oup.com
Background Accurate and complete reference genome assemblies are fundamental for
biological research. Cucumber is an important vegetable crop and model system for sex …

Advances in plant genome sequencing

JP Hamilton, C Robin Buell - The Plant Journal, 2012 - Wiley Online Library
The study of plant biology in the 21st century is, and will continue to be, vastly different from
that in the 20th century. One driver for this has been the use of genomics methods to reveal …

Chromosome rearrangements during domestication of cucumber as revealed by high‐density genetic mapping and draft genome assembly

L Yang, DH Koo, Y Li, X Zhang, F Luan… - The Plant …, 2012 - Wiley Online Library
Cucumber, Cucumis sativus L. is the only taxon with 2n= 2x= 14 chromosomes in the genus
Cucumis. It consists of two cross‐compatible botanical varieties: the cultivated C. sativus var …

Genomics and marker-assisted improvement of vegetable crops

I Simko, M Jia, J Venkatesh, BC Kang… - Critical Reviews in …, 2021 - Taylor & Francis
Vegetables are an integral part of the human diet worldwide. Traditional breeding
approaches have been used extensively to develop new cultivars of vegetables with …

Combined genomic, transcriptomic, and metabolomic analyses provide insights into chayote (Sechium edule) evolution and fruit development

A Fu, Q Wang, J Mu, L Ma, C Wen, X Zhao… - Horticulture …, 2021 - academic.oup.com
Chayote (Sechium edule) is an agricultural crop in the Cucurbitaceae family that is rich in
bioactive components. To enhance genetic research on chayote, we used Nanopore third …

Vegetable biology and breeding in the genomics era

H Li, X Yang, Y Shang, Z Zhang, S Huang - Science China Life Sciences, 2023 - Springer
Vegetable crops provide a rich source of essential nutrients for humanity and represent
critical economic values to global rural societies. However, genetic studies of vegetable …