Artificial intelligence to deep learning: machine intelligence approach for drug discovery

R Gupta, D Srivastava, M Sahu, S Tiwari, RK Ambasta… - Molecular …, 2021 - Springer
Drug designing and development is an important area of research for pharmaceutical
companies and chemical scientists. However, low efficacy, off-target delivery, time …

Sequence representation approaches for sequence-based protein prediction tasks that use deep learning

F Cui, Z Zhang, Q Zou - Briefings in Functional Genomics, 2021 - academic.oup.com
Deep learning has been increasingly used in bioinformatics, especially in sequence-based
protein prediction tasks, as large amounts of biological data are available and deep learning …

Onionnet: a multiple-layer intermolecular-contact-based convolutional neural network for protein–ligand binding affinity prediction

L Zheng, J Fan, Y Mu - ACS omega, 2019 - ACS Publications
Computational drug discovery provides an efficient tool for helping large-scale lead
molecule screening. One of the major tasks of lead discovery is identifying molecules with …

Deep learning based drug screening for novel coronavirus 2019-nCov

H Zhang, KM Saravanan, Y Yang, MT Hossain… - Interdisciplinary …, 2020 - Springer
A novel coronavirus, called 2019-nCoV, was recently found in Wuhan, Hubei Province of
China, and now is spreading across China and other parts of the world. Although there are …

A novel virtual screening procedure identifies Pralatrexate as inhibitor of SARS-CoV-2 RdRp and it reduces viral replication in vitro

H Zhang, Y Yang, J Li, M Wang… - PLoS computational …, 2020 - journals.plos.org
The spread of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus poses
serious threats to the global public health and leads to worldwide crisis. No effective drug or …

An integrated deep learning and molecular dynamics simulation-based screening pipeline identifies inhibitors of a new cancer drug target TIPE2

H Zhang, J Li, KM Saravanan, H Wu, Z Wang… - Frontiers in …, 2021 - frontiersin.org
The TIPE2 (tumor necrosis factor-alpha-induced protein 8-like 2) protein is a major regulator
of cancer and inflammatory diseases. The availability of its sequence and structure, as well …

Deepbindgcn: Integrating molecular vector representation with graph convolutional neural networks for protein–ligand interaction prediction

H Zhang, KM Saravanan, JZH Zhang - Molecules, 2023 - mdpi.com
The core of large-scale drug virtual screening is to select the binders accurately and
efficiently with high affinity from large libraries of small molecules in which non-binders are …

Drug design and disease diagnosis: the potential of deep learning models in biology

S Sreeraman, MP Kannan… - Current …, 2023 - ingentaconnect.com
Early prediction and detection enable reduced transmission of human diseases and provide
healthcare professionals ample time to make subsequent diagnoses and treatment …

SPVec: a Word2vec-inspired feature representation method for drug-target interaction prediction

YF Zhang, X Wang, AC Kaushik, Y Chu, X Shan… - Frontiers in …, 2020 - frontiersin.org
Drug discovery is an academical and commercial process of global importance. Accurate
identification of drug-target interactions (DTIs) can significantly facilitate the drug discovery …

Fusing sequence and structural knowledge by heterogeneous models to accurately and interpretively predict drug–target affinity

X Zeng, KY Zhong, B Jiang, Y Li - Molecules, 2023 - mdpi.com
Drug–target affinity (DTA) prediction is crucial for understanding molecular interactions and
aiding drug discovery and development. While various computational methods have been …