Nature and extent of the deep biosphere

FS Colwell, S D'Hondt - Reviews in Mineralogy and …, 2013 - pubs.geoscienceworld.org
In the last three decades we have learned a great deal about microbes in subsurface
environments. Once, these habitats were rarely examined, perhaps because so much of the …

Three roads diverged? Routes to phylogeographic inference

EW Bloomquist, P Lemey, MA Suchard - Trends in Ecology & Evolution, 2010 - cell.com
Phylogeographic methods facilitate inference of the geographical history of genetic
lineages. Recent examples explore human migration and the origins of viral pandemics …

A survey of digital earth

A Mahdavi-Amiri, T Alderson, F Samavati - Computers & Graphics, 2015 - Elsevier
The creation of a digital representation of the Earth and its associated data is a complex and
difficult task. The incredible size of geospatial data and differences between data sets pose …

Towards a collaborative, global infrastructure for biodiversity assessment

RP Guralnick, AW Hill, M Lane - Ecology letters, 2007 - Wiley Online Library
Biodiversity data are rapidly becoming available over the Internet in common formats that
promote sharing and exchange. Currently, these data are somewhat problematic, primarily …

GenGIS: A geospatial information system for genomic data

DH Parks, M Porter, S Churcher, S Wang… - Genome …, 2009 - genome.cshlp.org
The increasing availability of genetic sequence data associated with explicit geographic and
ecological information is offering new opportunities to study the processes that shape …

Evolutionary biology in biodiversity science, conservation, and policy: a call to action

AP Hendry, LG Lohmann, E Conti, J Cracraft… - …, 2010 - academic.oup.com
Evolutionary biologists have long endeavored to document how many species exist on
Earth, to understand the processes by which biodiversity waxes and wanes, to document …

Biodiversity informatics: automated approaches for documenting global biodiversity patterns and processes

R Guralnick, A Hill - Bioinformatics, 2009 - academic.oup.com
Motivation: Data about biodiversity have been scattered in different formats in natural history
collections, survey reports and the literature. A central challenge for the biodiversity …

POY version 5: phylogenetic analysis using dynamic homologies under multiple optimality criteria

WC Wheeler, N Lucaroni, L Hong, LM Crowley… - …, 2015 - Wiley Online Library
We present POY version 5, an open source program for the phylogenetic analysis of diverse
data types including qualitative, aligned sequences, unaligned sequences, genomic data …

The big questions for biodiversity informatics

AT Peterson, S Knapp, R Guralnick… - Systematics and …, 2010 - Taylor & Francis
Science is a sequence of generating new ideas, detailed explorations, incorporation of the
results into a toolbox for understanding data, and turning them into useful knowledge. One …

Combining spatial-temporal and phylogenetic analysis approaches for improved understanding on global H5N1 transmission

L Liang, B Xu, Y Chen, Y Liu, W Cao, L Fang, L Feng… - PloS one, 2010 - journals.plos.org
Background Since late 2003, the highly pathogenic influenza A H5N1 had initiated several
outbreak waves that swept across the Eurasia and Africa continents. Getting prepared for …