Inferences from tip‐calibrated phylogenies: a review and a practical guide

A Rieux, F Balloux - Molecular ecology, 2016 - Wiley Online Library
Molecular dating of phylogenetic trees is a growing discipline using sequence data to co‐
estimate the timing of evolutionary events and rates of molecular evolution. All molecular …

RASP 4: ancestral state reconstruction tool for multiple genes and characters

Y Yu, C Blair, X He - Molecular biology and evolution, 2020 - academic.oup.com
With the continual progress of sequencing techniques, genome-scale data are increasingly
used in phylogenetic studies. With more data from throughout the genome, the relationship …

Protective role of the Arabidopsis leaf microbiota against a bacterial pathogen

CM Vogel, DB Potthoff, M Schäfer, N Barandun… - Nature …, 2021 - nature.com
The aerial parts of plants are host to taxonomically structured bacterial communities.
Members of the core phyllosphere microbiota can protect Arabidopsis thaliana against foliar …

phylosignal: an R package to measure, test, and explore the phylogenetic signal

F Keck, F Rimet, A Bouchez, A Franc - Ecology and evolution, 2016 - Wiley Online Library
Phylogenetic signal is the tendency for closely related species to display similar trait values
as a consequence of their phylogenetic proximity. Ecologists and evolutionary biologists are …

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

T Jombart, S Devillard, F Balloux - BMC genetics, 2010 - Springer
Background The dramatic progress in sequencing technologies offers unprecedented
prospects for deciphering the organization of natural populations in space and time …

How to measure and test phylogenetic signal

T Münkemüller, S Lavergne, B Bzeznik… - Methods in Ecology …, 2012 - Wiley Online Library
Phylogenetic signal is the tendency of related species to resemble each other more than
species drawn at random from the same tree. This pattern is of considerable interest in a …

Similarity of introduced plant species to native ones facilitates naturalization, but differences enhance invasion success

J Divíšek, M Chytrý, B Beckage, NJ Gotelli… - Nature …, 2018 - nature.com
The search for traits associated with plant invasiveness has yielded contradictory results, in
part because most previous studies have failed to recognize that different traits are important …

Phylogenetic conservatism of functional traits in microorganisms

AC Martiny, K Treseder, G Pusch - The ISME journal, 2013 - academic.oup.com
A central question in biology is how biodiversity influences ecosystem functioning.
Underlying this is the relationship between organismal phylogeny and the presence of …

Crop wild phylorelatives (CWPs): phylogenetic distance, cytogenetic compatibility and breeding system data enable estimation of crop wild relative gene pool …

J Viruel, MB Kantar, R Gargiulo… - Botanical Journal of …, 2021 - academic.oup.com
Enabling food security requires access to a broad range of genetic resources to facilitate
crop breeding. This need is increased in a climate change scenario, which will require the …

Spatial and evolutionary predictability of phytochemical diversity

E Defossez, C Pitteloud… - Proceedings of the …, 2021 - National Acad Sciences
To cope with environmental challenges, plants produce a wide diversity of phytochemicals,
which are also the source of numerous medicines. Despite decades of research in chemical …