Protein Data Bank (PDB): the single global macromolecular structure archive
Abstract The Protein Data Bank (PDB)––the single global repository of experimentally
determined 3D structures of biological macromolecules and their complexes––was …
determined 3D structures of biological macromolecules and their complexes––was …
Cryo-electron microscopy methodology: current aspects and future directions
Cryo-electron microscopy (cryo-EM) has emerged as a powerful structure determination
technique. Its most prolific branch is single particle analysis (SPA), a method being used in a …
technique. Its most prolific branch is single particle analysis (SPA), a method being used in a …
RCSB Protein Data Bank (RCSB. org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from …
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB), founding member of the Worldwide Protein Data Bank (wwPDB), is the US data center …
PDB), founding member of the Worldwide Protein Data Bank (wwPDB), is the US data center …
Search and sequence analysis tools services from EMBL-EBI in 2022
F Madeira, M Pearce, ARN Tivey… - Nucleic acids …, 2022 - academic.oup.com
The EMBL-EBI search and sequence analysis tools frameworks provide integrated access to
EMBL-EBI's data resources and core bioinformatics analytical tools. EBI Search …
EMBL-EBI's data resources and core bioinformatics analytical tools. EBI Search …
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures
D Sehnal, S Bittrich, M Deshpande… - Nucleic acids …, 2021 - academic.oup.com
Large biomolecular structures are being determined experimentally on a daily basis using
established techniques such as crystallography and electron microscopy. In addition …
established techniques such as crystallography and electron microscopy. In addition …
Biological magnetic resonance data bank
JC Hoch, K Baskaran, H Burr, J Chin… - Nucleic acids …, 2023 - academic.oup.com
Abstract The Biological Magnetic Resonance Data Bank (BMRB, https://bmrb. io) is the
international open data repository for biomolecular nuclear magnetic resonance (NMR) …
international open data repository for biomolecular nuclear magnetic resonance (NMR) …
Automated model building and protein identification in cryo-EM maps
Interpreting electron cryo-microscopy (cryo-EM) maps with atomic models requires high
levels of expertise and labour-intensive manual intervention in three-dimensional computer …
levels of expertise and labour-intensive manual intervention in three-dimensional computer …
UCSF ChimeraX: Structure visualization for researchers, educators, and developers
EF Pettersen, TD Goddard, CC Huang… - Protein …, 2021 - Wiley Online Library
UCSF ChimeraX is the next‐generation interactive visualization program from the Resource
for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. ChimeraX …
for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. ChimeraX …
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
Cryo-EM maps are valuable sources of information for protein structure modeling. However,
due to the loss of contrast at high frequencies, they generally need to be post-processed to …
due to the loss of contrast at high frequencies, they generally need to be post-processed to …
Data-driven regularization lowers the size barrier of cryo-EM structure determination
Macromolecular structure determination by electron cryo-microscopy (cryo-EM) is limited by
the alignment of noisy images of individual particles. Because smaller particles have weaker …
the alignment of noisy images of individual particles. Because smaller particles have weaker …