Peptide self-assembly: thermodynamics and kinetics

J Wang, K Liu, R Xing, X Yan - Chemical Society Reviews, 2016 - pubs.rsc.org
Self-assembling systems play a significant role in physiological functions and have therefore
attracted tremendous attention due to their great potential for applications in energy …

Molecular dynamics simulation of protein biosurfactants

DL Cheung, S Samantray - Colloids and Interfaces, 2018 - mdpi.com
Surfaces and interfaces are ubiquitous in nature and are involved in many biological
processes. Due to this, natural organisms have evolved a number of methods to control …

Determination of absolute orientation of protein α-helices at interfaces using phase-resolved sum frequency generation spectroscopy

L Schmüser, S Roeters, H Lutz… - The Journal of …, 2017 - ACS Publications
Understanding the structure of proteins at surfaces is key in fields such as biomaterials
research, biosensor design, membrane biophysics, and drug design. A particularly important …

Complex role of chemical nature and tacticity in the adsorption free energy of carboxylic acid polymers at the oil–water interface: molecular dynamics simulations

R Kurapati, U Natarajan - Physical Chemistry Chemical Physics, 2023 - pubs.rsc.org
Scientific understanding of the molecular structure and adsorption of polymers at oil–water
liquid interfaces is very limited. In this study the adsorption free energy at the oil (CCl4) …

Conformation and aggregation of LKα14 peptide in bulk water and at the air/water Interface

C Dalgicdir, M Sayar - The Journal of Physical Chemistry B, 2015 - ACS Publications
Historically, the protein folding problem has mainly been associated with understanding the
relationship between amino acid sequence and structure. However, it is known that both the …

Molecular dynamics simulation of shape and structure evolution of preassembled cylindrical cetyltrimethylammonium bromide micelles induced by octanol

X Jia, J Chen, B Wang, W Liu, J Hao - Colloids and Surfaces A …, 2014 - Elsevier
United-atomic molecular dynamics simulation was performed to probe the shape and
structure evolution of the preassembled cylindrical cetyltrimethylammonium bromide (CTAB) …

Predicting recombinant protein expression experiments using molecular dynamics simulation

A Schaller, NK Connors, SA Oelmeier… - Chemical Engineering …, 2015 - Elsevier
Soluble expression of de novo-designed proteins in Escherichia coli (E. coli) remains
empirical. For given experimental conditions expression success is determined in part by …

Representing environment-induced helix-coil transitions in a coarse grained peptide model

C Dalgicdir, C Globisch, M Sayar, C Peter - The European Physical …, 2016 - Springer
Coarse grained (CG) models are widely used in studying peptide self-assembly and
nanostructure formation. One of the recurrent challenges in CG modeling is the problem of …

Structure Formation in Langmuir Peptide Films As Revealed from Coarse-Grained Molecular Dynamics Simulations

V Knecht, G Reiter, H Schlaad, R Reiter - Langmuir, 2017 - ACS Publications
Molecular dynamics simulations in conjunction with the Martini coarse-grained model have
been used to investigate the (nonequilibrium) behavior of helical 22-residue poly (γ-benzyl-l …

Self-assembly formation of peptide and protein nanofibers on surfaces and at interfaces

S Sun, Z Su, G Wei - Artificial Protein and Peptide Nanofibers, 2020 - Elsevier
The self-assembly of biomolecules such as proteins and peptides can be controlled by
adjusting molecule-molecule and molecule-material interactions. In this work, we summarize …