DNA topoisomerases: structure, function, and mechanism

JJ Champoux - Annual review of biochemistry, 2001 - annualreviews.org
▪ Abstract DNA topoisomerases solve the topological problems associated with DNA
replication, transcription, recombination, and chromatin remodeling by introducing …

Nucleases: diversity of structure, function and mechanism

W Yang - Quarterly reviews of biophysics, 2011 - cambridge.org
Nucleases cleave the phosphodiester bonds of nucleic acids and may be endo or exo,
DNase or RNase, topoisomerases, recombinases, ribozymes, or RNA splicing enzymes. In …

Inference of macromolecular assemblies from crystalline state

E Krissinel, K Henrick - Journal of molecular biology, 2007 - Elsevier
We discuss basic physical–chemical principles underlying the formation of stable
macromolecular complexes, which in many cases are likely to be the biological units …

Mechanisms of site-specific recombination

NDF Grindley, KL Whiteson, PA Rice - Annu. Rev. Biochem., 2006 - annualreviews.org
Integration, excision, and inversion of defined DNA segments commonly occur through site-
specific recombination, a process of DNA breakage and reunion that requires no DNA …

The many faces of the helix-turn-helix domain: transcription regulation and beyond

L Aravind, V Anantharaman, S Balaji… - FEMS microbiology …, 2005 - academic.oup.com
The helix-turn-helix (HTH) domain is a common denominator in basal and specific
transcription factors from the three super-kingdoms of life. At its core, the domain comprises …

An overview of the structures of protein-DNA complexes

NM Luscombe, SE Austin, HM Berman, JM Thornton - Genome biology, 2000 - Springer
On the basis of a structural analysis of 240 protein-DNA complexes contained in the Protein
Data Bank (PDB), we have classified the DNA-binding proteins involved into eight different …

Structural basis for control by phosphorylation

LN Johnson, RJ Lewis - Chemical reviews, 2001 - ACS Publications
Posttranslational modification by phosphorylation is a ubiquitous regulatory mechanism in
both eukaryotes and prokaryotes. Intracellular phosphorylation by protein kinases, triggered …

Growth inhibition and DNA damage induced by Cre recombinase in mammalian cells

A Loonstra, M Vooijs, HB Beverloo… - Proceedings of the …, 2001 - National Acad Sciences
The use of Cre/loxP recombination in mammalian cells has expanded rapidly. We describe
here that Cre expression in cultured mammalian cells may result in a markedly reduced …

A model for the mechanism of human topoisomerase I

L Stewart, MR Redinbo, X Qiu, WGJ Hol, JJ Champoux - Science, 1998 - science.org
The three-dimensional structure of a 70-kilodalton amino terminally truncated form of human
topoisomerase I in complex with a 22–base pair duplex oligonucleotide, determined to a …

In vitro site-specific integration of bacteriophage DNA catalyzed by a recombinase of the resolvase/invertase family

HM Thorpe, MCM Smith - Proceedings of the National …, 1998 - National Acad Sciences
The genome of the broad host range Streptomyces temperate phage, φC31, is known to
integrate into the host chromosome via an enzyme that is a member of the …