Single-molecule analysis and engineering of DNA motors

S Mohapatra, CT Lin, XA Feng, A Basu, T Ha - Chemical reviews, 2019 - ACS Publications
Molecular motors are diverse enzymes that transduce chemical energy into mechanical
work and, in doing so, perform critical cellular functions such as DNA replication and …

Direct hOGG1-Myc interactions inhibit hOGG1 catalytic activity and recruit Myc to its promoters under oxidative stress

DM Bangalore, I Tessmer - Nucleic Acids Research, 2022 - academic.oup.com
The base excision repair (BER) glycosylase hOGG1 (human oxoguanine glycosylase 1) is
responsible for repairing oxidative lesions in the genome, in particular oxidised guanine …

Single-molecule imaging of genome maintenance proteins encountering specific DNA sequences and structures

EM Irvin, H Wang - DNA repair, 2023 - Elsevier
DNA repair pathways are tightly regulated processes that recognize specific hallmarks of
DNA damage and coordinate lesion repair through discrete mechanisms, all within the …

Resolving the subtle details of human DNA alkyltransferase lesion search and repair mechanism by single-molecule studies

S Kono, A van den Berg, M Simonetta… - Proceedings of the …, 2022 - National Acad Sciences
The O6-alkylguanine DNA alkyltransferase (AGT) is an important DNA repair protein. AGT
repairs highly mutagenic and cytotoxic alkylguanine lesions that result from metabolic …

Cohesin SA2 is a sequence-independent DNA-binding protein that recognizes DNA replication and repair intermediates

P Countryman, Y Fan, A Gorthi, H Pan… - Journal of Biological …, 2018 - ASBMB
Proper chromosome alignment and segregation during mitosis depend on cohesion
between sister chromatids, mediated by the cohesin protein complex, which also plays …

A single-molecule atomic force microscopy study of PARP1 and PARP2 recognition of base excision repair DNA intermediates

MV Sukhanova, L Hamon, MM Kutuzov, V Joshi… - Journal of molecular …, 2019 - Elsevier
Nuclear poly (ADP-ribose) polymerases 1 and 2 (PARP1 and PARP2) catalyze the synthesis
of poly (ADP-ribose)(PAR) and use NAD+ as a substrate for the polymer synthesis. Both …

Structural and biochemical insight into the mechanism of dual CpG site binding and methylation by the DNMT3A DNA methyltransferase

M Emperle, DM Bangalore, S Adam… - Nucleic acids …, 2021 - academic.oup.com
Abstract DNMT3A/3L heterotetramers contain two active centers binding CpG sites at 12 bp
distance, however their interaction with DNA not containing this feature is unclear. Using …

Single-molecule DREEM imaging reveals DNA wrapping around human mitochondrial single-stranded DNA binding protein

P Kaur, MJ Longley, H Pan, H Wang… - Nucleic Acids …, 2018 - academic.oup.com
Improper maintenance of the mitochondrial genome progressively disrupts cellular
respiration and causes severe metabolic disorders commonly termed mitochondrial …

Strand-specific recognition of DNA damages by XPD provides insights into nucleotide excision repair substrate versatility

CN Buechner, K Heil, G Michels, T Carell… - Journal of Biological …, 2014 - ASBMB
Recognition and removal of DNA damages is essential for cellular and organismal viability.
Nucleotide excision repair (NER) is the sole mechanism in humans for the repair of …

DNA garden: A simple method for producing arrays of stretchable DNA for single-molecule fluorescence imaging of DNA-binding proteins

C Igarashi, A Murata, Y Itoh… - Bulletin of the …, 2017 - academic.oup.com
We developed a simple method for producing arrays of stretchable DNAs, called DNA
garden, for single-molecule fluorescence measurements. The method is based on …