An introduction to NMR-based approaches for measuring protein dynamics

IR Kleckner, MP Foster - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2011 - Elsevier
Proteins are inherently flexible at ambient temperature. At equilibrium, they are
characterized by a set of conformations that undergo continuous exchange within a …

New Insights into the Cooperativity and Dynamics of Dimeric Enzymes

KW Chen, TY Sun, YD Wu - Chemical Reviews, 2023 - ACS Publications
A survey of protein databases indicates that the majority of enzymes exist in oligomeric
forms, with about half of those found in the UniProt database being homodimeric …

Studying dynamics by magic-angle spinning solid-state NMR spectroscopy: Principles and applications to biomolecules

P Schanda, M Ernst - Progress in nuclear magnetic resonance …, 2016 - Elsevier
Magic-angle spinning solid-state NMR spectroscopy is an important technique to study
molecular structure, dynamics and interactions, and is rapidly gaining importance in …

NMR spectroscopy brings invisible protein states into focus

AJ Baldwin, LE Kay - Nature chemical biology, 2009 - nature.com
Molecular dynamics are essential for protein function. In some cases these dynamics involve
the interconversion between ground state, highly populated conformers and less populated …

Chemical exchange in biomacromolecules: past, present, and future

AG Palmer III - Journal of magnetic resonance, 2014 - Elsevier
The perspective reviews quantitative investigations of chemical exchange phenomena in
proteins and other biological macromolecules using NMR spectroscopy, particularly …

The origin of allosteric functional modulation: multiple pre-existing pathways

A Del Sol, CJ Tsai, B Ma, R Nussinov - Structure, 2009 - cell.com
Although allostery draws increasing attention, not much is known about allosteric
mechanisms. Here we argue that in all proteins, allosteric signals transmit through multiple …

Protein dynamics and allostery: an NMR view

SR Tzeng, CG Kalodimos - Current opinion in structural biology, 2011 - Elsevier
Allostery, the process by which distant sites within a protein system are energetically
coupled, is an efficient and ubiquitous mechanism for activity regulation. A purely …

Eukaryotic transcription factors: paradigms of protein intrinsic disorder

L Staby, C O'Shea, M Willemoës, F Theisen… - Biochemical …, 2017 - portlandpress.com
Gene-specific transcription factors (TFs) are key regulatory components of signaling
pathways, controlling, for example, cell growth, development, and stress responses. Their …

Dynamic allostery: linkers are not merely flexible

B Ma, CJ Tsai, T Haliloğlu, R Nussinov - Structure, 2011 - cell.com
Most proteins consist of multiple domains. How do linkers efficiently transfer information
between sites that are on different domains to activate the protein? Mere flexibility only …

Interaction energy based protein structure networks

MS Vijayabaskar, S Vishveshwara - Biophysical journal, 2010 - cell.com
The three-dimensional structure of a protein is formed and maintained by the noncovalent
interactions among the amino-acid residues of the polypeptide chain. These interactions can …