Multifarious aspects of the chaos game representation and its applications in biological sequence analysis
A Kania, K Sarapata - Computers in Biology and Medicine, 2022 - Elsevier
Chaos game representation (CGR) has been successfully applied in bioinformatics for over
30 years. Since then, many further extensions were announced. Numerical encoding of …
30 years. Since then, many further extensions were announced. Numerical encoding of …
Sequence-based optimized chaos game representation and deep learning for peptide/protein classification
B Huang, E Zhang, R Chaudhari, H Gimperlein - bioRxiv, 2022 - biorxiv.org
As an effective graphical representation method for 1D sequence (eg, text), Chaos Game
Repre-sentation (CGR) has been frequently combined with deep learning (DL) for biological …
Repre-sentation (CGR) has been frequently combined with deep learning (DL) for biological …
Unleashing Genomic Insights with AB Learning: A Self-Supervised Whole-Genome Language Model
B Naidenov - 2023 - search.proquest.com
The language of genetic code embodies a complex grammar and rich syntax of interacting
molecular elements. In this regard, the standard additive marker encoding scheme's inability …
molecular elements. In this regard, the standard additive marker encoding scheme's inability …
Matrix completion with weighted constraint for haplotype estimation
Estimation of haplotype sequences from DNA sequencing samples is a challenging task
whose mathematical formulation leads to an NP-hard problem. Also, accuracy of the …
whose mathematical formulation leads to an NP-hard problem. Also, accuracy of the …
A chaotic viewpoint-based approach to solve haplotype assembly using hypergraph model
Decreasing the cost of high-throughput DNA sequencing technologies, provides a huge
amount of data that enables researchers to determine haplotypes for diploid and polyploid …
amount of data that enables researchers to determine haplotypes for diploid and polyploid …
[HTML][HTML] RCOVID19: Recurrence-based SARS-CoV-2 features using chaos game representation
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is responsible for the
COVID-19 pandemic. It was first detected in China and was rapidly spread to other …
COVID-19 pandemic. It was first detected in China and was rapidly spread to other …
[HTML][HTML] Evolutionary Relationship of Protein Sequences of SARS-CoV-2 and Other Viruses through Chaos Game Representation
MD Hill, KE Simmons, DC Sengupta - Computational Molecular Bioscience, 2022 - scirp.org
Comparison between different biological sequences is a key step in bioinformatics when
analyzing similarities of sequences and phylogenetic relationships. A method of graphically …
analyzing similarities of sequences and phylogenetic relationships. A method of graphically …