Computational oncology in the multi-omics era: state of the art

G de Anda-Jáuregui, E Hernández-Lemus - Frontiers in oncology, 2020 - frontiersin.org
Cancer is the quintessential complex disease. As technologies evolve faster each day, we
are able to quantify the different layers of biological elements that contribute to the …

Advancing immunotherapy for melanoma: the critical role of single-cell analysis in identifying predictive biomarkers

R He, J Lu, J Feng, Z Lu, K Shen, K Xu, H Luo… - Frontiers in …, 2024 - frontiersin.org
Melanoma, a malignant skin cancer arising from melanocytes, exhibits rapid metastasis and
a high mortality rate, especially in advanced stages. Current treatment modalities, including …

Cytogenetics and cytogenomics evaluation in cancer

IP Ribeiro, JB Melo, IM Carreira - International journal of molecular …, 2019 - mdpi.com
The availability of cytogenetics and cytogenomics technologies improved the detection and
identification of tumor molecular signatures as well as the understanding of cancer initiation …

Single cell analyses to understand the immune continuum in atherosclerosis

CA Hill, DM Fernandez, C Giannarelli - Atherosclerosis, 2021 - Elsevier
Atherosclerosis is initiated by the accumulation of lipids in the arterial wall that trigger a
complex and poorly understood network of inflammatory processes. At the same time, recent …

HIPSD&R-seq enables scalable genomic copy number and transcriptome profiling

J Otoničar, O Lazareva, JP Mallm, M Simovic-Lorenz… - Genome biology, 2024 - Springer
Single-cell DNA sequencing (scDNA-seq) enables decoding somatic cancer variation.
Existing methods are hampered by low throughput or cannot be combined with …

Tracking intratumoral heterogeneity in glioblastoma via regularized classification of single-cell RNA-Seq data

MB Lopes, S Vinga - BMC bioinformatics, 2020 - Springer
Background Understanding cellular and molecular heterogeneity in glioblastoma (GBM), the
most common and aggressive primary brain malignancy, is a crucial step towards the …

Identification of unique and shared mitochondrial DNA mutations in neurodegeneration and cancer by single-cell mitochondrial DNA structural variation sequencing …

E Jaberi, E Tresse, K Grønbæk, J Weischenfeldt… - …, 2020 - thelancet.com
Background Point mutations and structural variations (SVs) in mitochondrial DNA (mtDNA)
contribute to many neurodegenerative diseases. Technical limitations and heteroplasmy …

6-color/1-target immuno-SERS microscopy on the same single cancer cell

E Stepula, XP Wang, S Srivastav… - … applied materials & …, 2020 - ACS Publications
There is an urgent clinical need for multicolor imaging of single cancer cells (no ensemble
averaging) for identifying heterogenous expression of predictive biomarkers. Specifically …

Advances of single-cell genomics and epigenomics in human disease: where are we now?

R Kamies, CP Martinez-Jimenez - Mammalian Genome, 2020 - Springer
Cellular heterogeneity is revolutionizing the way to study, monitor and dissect complex
diseases. This has been possible with the technological and computational advances …

[HTML][HTML] A reliable machine learning approach applied to single-cell classification in acute myeloid leukemia

G Nicora, R Bellazzi - AMIA annual symposium proceedings, 2020 - ncbi.nlm.nih.gov
Abstract Machine Learning research applied to the medical field is increasing. However, few
of the proposed approaches are actually deployed in clinical settings. One reason is that …