[HTML][HTML] Learning from co-expression networks: possibilities and challenges

EAR Serin, H Nijveen, HWM Hilhorst… - Frontiers in plant …, 2016 - frontiersin.org
Plants are fascinating and complex organisms. A comprehensive understanding of the
organization, function and evolution of plant genes is essential to disentangle important …

Control of Arabidopsis Root Development

JJ Petricka, CM Winter, PN Benfey - Annual review of plant …, 2012 - annualreviews.org
The Arabidopsis root has been the subject of intense research over the past decades. This
research has led to significantly improved understanding of the molecular mechanisms …

A Systems Biology View of Responses to Lignin Biosynthesis Perturbations in Arabidopsis

R Vanholme, V Storme, B Vanholme, L Sundin… - The Plant …, 2012 - academic.oup.com
Lignin engineering is an attractive strategy to improve lignocellulosic biomass quality for
processing to biofuels and other bio-based products. However, lignin engineering also …

RNAi-mediated crop protection against insects

DRG Price, JA Gatehouse - Trends in biotechnology, 2008 - cell.com
Downregulation of the expression of specific genes through RNA interference (RNAi), has
been widely used for genetic research in insects. The method has relied on the injection of …

[HTML][HTML] Comparative analyses of C4 and C3 photosynthesis in developing leaves of maize and rice

L Wang, A Czedik-Eysenberg, RA Mertz, Y Si… - Nature …, 2014 - nature.com
C4 and C3 photosynthesis differ in the efficiency with which they consume water and
nitrogen. Engineering traits of the more efficient C4 photosynthesis into C3 crops could …

[HTML][HTML] A gene regulatory network for root epidermis cell differentiation in Arabidopsis

A Bruex, RM Kainkaryam, Y Wieckowski, YH Kang… - PLoS …, 2012 - journals.plos.org
The root epidermis of Arabidopsis provides an exceptional model for studying the molecular
basis of cell fate and differentiation. To obtain a systems-level view of root epidermal cell …

[HTML][HTML] Auxin production in the endosperm drives seed coat development in Arabidopsis

DD Figueiredo, RA Batista, PJ Roszak, L Hennig… - Elife, 2016 - elifesciences.org
In flowering plants, seed development is initiated by the fusion of the maternal egg and
central cells with two paternal sperm cells, leading to the formation of embryo and …

Inference of longevity-related genes from a robust coexpression network of seed maturation identifies regulators linking seed storability to biotic defense-related …

K Righetti, JL Vu, S Pelletier, BL Vu, E Glaab… - The plant …, 2015 - academic.oup.com
Seed longevity, the maintenance of viability during storage, is a crucial factor for
preservation of genetic resources and ensuring proper seedling establishment and high …

Mutually Exclusive Alterations in Secondary Metabolism Are Critical for the Uptake of Insoluble Iron Compounds by Arabidopsis and Medicago truncatula

J Rodríguez-Celma, WD Lin, GM Fu, J Abadía… - Plant …, 2013 - academic.oup.com
The generally low bioavailability of iron in aerobic soil systems forced plants to evolve
sophisticated genetic strategies to improve the acquisition of iron from sparingly soluble and …

VirtualPlant: a software platform to support systems biology research

MS Katari, SD Nowicki, FF Aceituno, D Nero… - Plant …, 2010 - academic.oup.com
Data generation is no longer the limiting factor in advancing biological research. In addition,
data integration, analysis, and interpretation have become key bottlenecks and challenges …