Synthetic gene circuits as tools for drug discovery

AM Beitz, CG Oakes, KE Galloway - Trends in Biotechnology, 2022 - cell.com
Within mammalian systems, there exists enormous opportunity to use synthetic gene circuits
to enhance phenotype-based drug discovery, to map the molecular origins of disease, and …

Function moves biomolecular condensates in phase space

M Feric, T Misteli - BioEssays, 2022 - Wiley Online Library
Phase separation underlies the formation of biomolecular condensates. We hypothesize the
cellular processes that occur within condensates shape their structural features. We use the …

Supercoiling-mediated feedback rapidly couples and tunes transcription

CP Johnstone, KE Galloway - Cell reports, 2022 - cell.com
Transcription induces a wave of DNA supercoiling, altering the binding affinity of RNA
polymerases and reshaping the biochemical landscape of gene regulation. As supercoiling …

Long-Term Transcriptomic Changes and Cardiomyocyte Hyperpolyploidy after Lactose Intolerance in Neonatal Rats

OV Anatskaya, AL Runov, SV Ponomartsev… - International Journal of …, 2023 - mdpi.com
Many cardiovascular diseases originate from growth retardation, inflammation, and
malnutrition during early postnatal development. The nature of this phenomenon is not …

Accelerating Diverse Cell-Based Therapies Through Scalable Design

EL Peterman, D Ploessl… - Annual Review of …, 2024 - annualreviews.org
Augmenting cells with novel, genetically encoded functions will support therapies that
expand beyond natural capacity for immune surveillance and tissue regeneration. However …

Single cell biology—a Keystone Symposia report

J Cable, MB Elowitz, AI Domingos… - Annals of the New …, 2021 - Wiley Online Library
Single cell biology has the potential to elucidate many critical biological processes and
diseases, from development and regeneration to cancer. Single cell analyses are …

Gene syntax defines supercoiling-mediated transcriptional feedback

CP Johnstone, KS Love, SR Kabaria, RD Jones… - bioRxiv, 2025 - biorxiv.org
Gene syntax—the order and arrangement of genes and their regulatory elements—shapes
the dynamic coordination of both natural and synthetic gene circuits. Transcription at one …

Cells transit through a quiescent-like state to convert to neurons at high rates

AM Beitz, J Teves, CG Oakes, CP Johnstone, NB Wang… - bioRxiv, 2024 - biorxiv.org
While transcription factors (TFs) provide essential cues for directing and redirecting cell fate,
TFs alone are insufficient to drive cells to adopt alternative fates. Rather, transcription factors …