MD Polêto, JA Lemkul - Journal of computational chemistry, 2022 - Wiley Online Library
We introduce TUPÃ, a Python‐based algorithm to calculate and analyze electric fields in molecular simulations. To demonstrate the features in TUPÃ, we present three test cases in …
X Yi, L Zhang, RA Friesner… - The journal of physical …, 2024 - ACS Publications
NMR chemical shifts provide a sensitive probe of protein structure and dynamics but remain challenging to predict and interpret. We examine the effect of protein conformational …
Abstract The nonstructural protein-1 (NSP1) of the severe acute respiratory syndrome- associated coronavirus 2 plays a crucial role in the translational shutdown and immune …
The structure of the transmembrane domain of the pH-activated bacterial potassium channel KcsA has been extensively characterized, yet little information is available on the structure of …
The bacterial ion channel KcsA has become a useful model of complex K+-ion channels thanks to its single pore domain structure whose sequence shares many similarities with …
V Kurauskas, M Tonelli… - Journal of General …, 2022 - rupress.org
A critical part of ion channel function is the ability to open and close in response to stimuli and thus conduct ions in a regulated fashion. While x-ray diffraction studies of ion channels …
H SAWCZYC, A LANGE - Integrated Structural Biology, 2023 - books.google.com
Proteins are a major constituent of cellular membranes, with an average plasma membrane being approximately 50% membrane proteins by mass. 1 In addition to their large number …
The intracellular environment is highly crowded (molecular crowding) and differs significantly from the environment in dilute solutions that we usually use in biochemical …
M Darrows, D Kodituwakku, J Xue, I Pickering, N Terrel… - 2025 - chemrxiv.org
This work introduces LEGOLAS, a fully open source TorchANI-based neural network model designed to predict NMR chemical shifts for protein backbone atoms. LEGOLAS has been …