Developing a fuzzy clustering model for better energy use in farm management systems

B Khoshnevisan, S Rafiee, M Omid… - … and Sustainable Energy …, 2015 - Elsevier
Wheat is considered as one of the most important strategic crops in Iran, and Iran
agricultural ministry has some special plans to encourage farmers to cultivate this crop, so …

Co-clustering ensembles based on multiple relevance measures

X Yu, G Yu, J Wang… - IEEE transactions on …, 2019 - ieeexplore.ieee.org
Co-clustering aims at discovering groups of both objects and features from a given data
matrix. Co-clustering ensembles can produce robust co-clusters by combining multiple base …

Discovering multiple co-clusterings with matrix factorization

J Wang, X Wang, G Yu, C Domeniconi… - IEEE Transactions …, 2019 - ieeexplore.ieee.org
Clustering is a fundamental data exploration task which aims at discovering the hidden
grouping structure in the data. The traditional clustering methods typically compute a single …

[HTML][HTML] Network-aided bi-clustering for discovering cancer subtypes

G Yu, X Yu, J Wang - Scientific reports, 2017 - nature.com
Bi-clustering is a widely used data mining technique for analyzing gene expression data. It
simultaneously groups genes and samples of an input gene expression data matrix to …

[HTML][HTML] Bi-EB: Empirical Bayesian Biclustering for Multi-Omics Data Integration Pattern Identification among Species

A Yazdanparast, L Li, C Zhang, L Cheng - Genes, 2022 - mdpi.com
Although several biclustering algorithms have been studied, few are used for cross-pattern
identification across species using multi-omics data mining. A fast empirical Bayesian …

[HTML][HTML] Carotta: revealing hidden confounder markers in metabolic breath profiles

AC Hauschild, T Frisch, JI Baumbach, J Baumbach - Metabolites, 2015 - mdpi.com
Computational breath analysis is a growing research area aiming at identifying volatile
organic compounds (VOCs) in human breath to assist medical diagnostics of the next …

NP-completeness of cell formation problem with grouping efficacy objective

MV Batsyn, EK Batsyna, IS Bychkov - International Journal of …, 2020 - Taylor & Francis
In the current paper we provide a proof of NP-completeness for the Cell Formation Problem
(CFP) with the fractional grouping efficacy objective function. First the CFP with a linear …

Inferring interaction networks from transcriptomic data: methods and applications

V Singh - arXiv preprint arXiv:2312.07012, 2023 - arxiv.org
Transcriptomic data is a treasure-trove in modern molecular biology, as it offers a
comprehensive viewpoint into the intricate nuances of gene expression dynamics …

Identification of differentially expressed gene modules in heterogeneous diseases

O Zolotareva, S Khakabimamaghani, OI Isaeva… - …, 2021 - academic.oup.com
Motivation Identification of differentially expressed genes is necessary for unraveling
disease pathogenesis. This task is complicated by the fact that many diseases are …

[HTML][HTML] Complexity of modification problems for reciprocal best match graphs

M Hellmuth, M Geiß, PF Stadler - Theoretical Computer Science, 2020 - Elsevier
Reciprocal best match graphs (RBMGs) are vertex colored graphs whose vertices represent
genes and the colors the species where the genes reside. Edges identify pairs of genes that …