Alternating-laser excitation: single-molecule FRET and beyond

J Hohlbein, TD Craggs, T Cordes - Chemical Society Reviews, 2014 - pubs.rsc.org
The alternating-laser excitation (ALEX) scheme continues to expand the possibilities of
fluorescence-based assays to study biological entities and interactions. Especially the …

Enzymatic oxygen scavenging for photostability without pH drop in single-molecule experiments

M Swoboda, J Henig, HM Cheng, D Brugger… - ACS …, 2012 - ACS Publications
Over the past years, bottom-up bionanotechnology has been developed as a promising tool
for future technological applications. Many of these biomolecule-based assemblies are …

Förster resonance energy transfer and protein-induced fluorescence enhancement as synergetic multi-scale molecular rulers

E Ploetz, E Lerner, F Husada, M Roelfs, SY Chung… - Scientific reports, 2016 - nature.com
Advanced microscopy methods allow obtaining information on (dynamic) conformational
changes in biomolecules via measuring a single molecular distance in the structure. It is …

[HTML][HTML] Nucleotide binding and conformational switching in the hexameric ring of a AAA+ machine

BM Stinson, AR Nager, SE Glynn, KR Schmitz… - Cell, 2013 - cell.com
ClpX, a AAA+ ring homohexamer, uses the energy of ATP binding and hydrolysis to power
conformational changes that unfold and translocate target proteins into the ClpP peptidase …

Single-molecule nanometry for biological physics

H Kim, T Ha - Reports on progress in physics, 2012 - iopscience.iop.org
Precision measurement is a hallmark of physics but the small length scale (∼ nanometer) of
elementary biological components and thermal fluctuations surrounding them challenge our …

PCNA tool belts and polymerase bridges form during translesion synthesis

EM Boehm, M Spies, MT Washington - Nucleic acids research, 2016 - academic.oup.com
Large multi-protein complexes play important roles in many biological processes, including
DNA replication and repair, transcription, and signal transduction. One of the challenges in …

Pushing the limits in real-time measurements of quantum dynamics

E Kleinherbers, P Stegmann, A Kurzmann, M Geller… - Physical Review Letters, 2022 - APS
Time-resolved studies of quantum systems are the key to understanding quantum dynamics
at its core. The real-time measurement of individual quantum numbers as they switch …

Interchromophoric interactions determine the maximum brightness density in DNA origami structures

T Schröder, MB Scheible, F Steiner, J Vogelsang… - Nano …, 2019 - ACS Publications
An ideal point light source is as small and as bright as possible. For fluorescent point light
sources, homogeneity of the light sources is important as well as that the fluorescent units …

The proliferating cell nuclear antigen (PCNA)-interacting protein (PIP) motif of DNA polymerase η mediates its interaction with the C-terminal domain of Rev1

EM Boehm, KT Powers, CM Kondratick, M Spies… - Journal of Biological …, 2016 - ASBMB
Y-family DNA polymerases, such as polymerase η, polymerase ι, and polymerase κ,
catalyze the bypass of DNA damage during translesion synthesis. These enzymes are …

Camera-based single-molecule FRET detection with improved time resolution

S Farooq, J Hohlbein - Physical Chemistry Chemical Physics, 2015 - pubs.rsc.org
The achievable time resolution of camera-based single-molecule detection is often limited
by the frame rate of the camera. Especially in experiments utilizing single-molecule Förster …