Complexity of the alternative splicing landscape in plants
Alternative splicing (AS) of precursor mRNAs (pre-mRNAs) from multiexon genes allows
organisms to increase their coding potential and regulate gene expression through multiple …
organisms to increase their coding potential and regulate gene expression through multiple …
What is code biology?
M Barbieri - Biosystems, 2018 - Elsevier
Various independent discoveries have shown that many organic codes exist in living
systems, and this implies that they came into being during the history of life and contributed …
systems, and this implies that they came into being during the history of life and contributed …
Genome-wide analysis of alternative splicing during development and drought stress in maize
SR Thatcher, ON Danilevskaya, X Meng… - Plant …, 2016 - academic.oup.com
Alternative splicing plays a crucial role in plant development as well as stress responses.
Although alternative splicing has been studied during development and in response to …
Although alternative splicing has been studied during development and in response to …
Genome-wide analyses of alternative splicing in plants: opportunities and challenges
WB Barbazuk, Y Fu, KM McGinnis - Genome research, 2008 - genome.cshlp.org
Alternative splicing (AS) creates multiple mRNA transcripts from a single gene. While AS is
known to contribute to gene regulation and proteome diversity in animals, the study of its …
known to contribute to gene regulation and proteome diversity in animals, the study of its …
Genome-Wide Analysis of Alternative Splicing in Zea mays: Landscape and Genetic Regulation
SR Thatcher, W Zhou, A Leonard, BB Wang… - The Plant …, 2014 - academic.oup.com
Alternative splicing enhances transcriptome diversity in all eukaryotes and plays a role in
plant tissue identity and stress adaptation. To catalog new maize (Zea mays) transcripts and …
plant tissue identity and stress adaptation. To catalog new maize (Zea mays) transcripts and …
Code biology–A new science of life
M Barbieri - Biosemiotics, 2012 - Springer
Abstract Systems Biology and the Modern Synthesis are recent versions of two classical
biological paradigms that are known as structuralism and functionalism, or internalism and …
biological paradigms that are known as structuralism and functionalism, or internalism and …
Accurate splice site prediction using support vector machines
Background For splice site recognition, one has to solve two classification problems:
discriminating true from decoy splice sites for both acceptor and donor sites. Gene finding …
discriminating true from decoy splice sites for both acceptor and donor sites. Gene finding …
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana
Alternative splicing (AS) of pre-mRNAs is an important regulatory mechanism shaping the
transcriptome. In plants, only few RNA-binding proteins are known to affect AS. Here, we …
transcriptome. In plants, only few RNA-binding proteins are known to affect AS. Here, we …
Genome-Wide Analysis of Heat-Sensitive Alternative Splicing in Physcomitrella patens
CY Chang, WD Lin, SL Tu - Plant physiology, 2014 - academic.oup.com
Plant growth and development are constantly influenced by temperature fluctuations. To
respond to temperature changes, different levels of gene regulation are modulated in the …
respond to temperature changes, different levels of gene regulation are modulated in the …
Transcriptome-wide identification of RNA targets of Arabidopsis SERINE/ARGININE-RICH45 uncovers the unexpected roles of this RNA binding protein in RNA …
Plant SR45 and its metazoan ortholog RNPS1 are serine/arginine-rich (SR)-like RNA
binding proteins that function in splicing/postsplicing events and regulate diverse processes …
binding proteins that function in splicing/postsplicing events and regulate diverse processes …