Alpha beta-hydrolase fold enzymes structures, functions and mechanisms

M Holmquist - Current Protein and Peptide Science, 2000 - ingentaconnect.com
The alpha beta-hydrolase fold family of enzymes is rapidly becoming one of the largest
group of structurally related enzymes with diverse catalytic functions. Members in this family …

Electrostatic origin of the catalytic power of enzymes and the role of preorganized active sites

A Warshel - Journal of Biological Chemistry, 1998 - ASBMB
Enzymatic reactions are involved in most biological processes. Thus, there is a major
practical and fundamental interest in finding out what makes enzymes so efficient. Many …

Mechanisms and free energies of enzymatic reactions

J Gao, S Ma, DT Major, K Nam, J Pu… - Chemical …, 2006 - ACS Publications
Most enzymatic reactions have very large and remarkably similar apparent second-order
rate constants, kcat/KM, at mean values of about 107 M-1 s-1 with kcat in the range of 10 …

Bacterial dehalogenation

S Fetzner - Applied microbiology and biotechnology, 1998 - Springer
Halogenated organic compounds are produced industrially in large quantities and represent
an important class of environmental pollutants. However, an abundance of haloorganic …

Energetics and dynamics of enzymatic reactions

J Villa, A Warshel - The Journal of Physical Chemistry B, 2001 - ACS Publications
This review considers the advances made in using computer simulations to elucidate the
catalytic power of enzymes. It is shown that some current approaches, and in particular the …

Challenges in enzyme mechanism and energetics

DA Kraut, KS Carroll, D Herschlag - Annual review of …, 2003 - annualreviews.org
▪ Abstract Since the discovery of enzymes as biological catalysts, study of their enormous
catalytic power and exquisite specificity has been central to biochemistry. Nevertheless …

Ground state and transition state contributions to the rates of intramolecular and enzymatic reactions

TC Bruice, FC Lightstone - Accounts of chemical research, 1999 - ACS Publications
Reactions within enzyme-substrate (E ‚S) complexes share with intramolecular reactions the
close proximity of reactants. This proximity effect results in a much larger numerical value of …

Evolving haloalkane dehalogenases

DB Janssen - Current opinion in chemical biology, 2004 - Elsevier
Mechanistic insight into the biochemistry of carbon–halogen bond cleavage is rapidly
growing because of recent structural, biochemical and computational studies that have …

Haloalkane Dehalogenases:  Structure of a Rhodococcus Enzyme,

J Newman, TS Peat, R Richard, L Kan… - Biochemistry, 1999 - ACS Publications
The hydrolytic haloalkane dehalogenases are promising bioremediation and biocatalytic
agents. Two general classes of dehalogenases have been reported from Xanthobacter and …

Structure⧸ Function Correlations of Proteins using MM, QM⧸ MM, and Related Approaches: Methods, Concepts, Pitfalls, and Current Progress

A Shurki, A Warshel - Advances in protein chemistry, 2003 - Elsevier
Publisher Summary This chapter focuses on the progress and the current state of
structure/function correlations of biomolecules. One of the primary goals of modern …