Modelling hormonal response and development

U Voß, A Bishopp, E Farcot, MJ Bennett - Trends in plant science, 2014 - cell.com
As our knowledge of the complexity of hormone homeostasis, transport, perception, and
response increases, and their outputs become less intuitive, modelling is set to become …

Hormone symphony during root growth and development

A Garay‐Arroyo, M De La Paz Sánchez… - Developmental …, 2012 - Wiley Online Library
Hormones regulate plant growth and development in response to external environmental
stimuli via complex signal transduction pathways, which in turn form complex networks of …

Primary root protophloem differentiation requires balanced phosphatidylinositol-4, 5-biphosphate levels and systemically affects root branching

A Rodriguez-Villalon, B Gujas, R Van Wijk… - …, 2015 - journals.biologists.com
Protophloem is a specialized vascular tissue in growing plant organs, such as root
meristems. In Arabidopsis mutants with impaired primary root protophloem differentiation …

[HTML][HTML] The zigzag model of plant–microbe interactions: is it time to move on?

L Pritchard, PRJ Birch - Molecular plant pathology, 2014 - ncbi.nlm.nih.gov
In 2006, Jones and Dangl proposed a simple coevolutionary model of plant–pathogen
interactions, called the 'zigzag'model, which encompasses two branches of the plant …

Integrated Systems View on Networking by Hormones in Arabidopsis Immunity Reveals Multiple Crosstalk for Cytokinin

M Naseem, N Philippi, A Hussain, G Wangorsch… - The Plant …, 2012 - academic.oup.com
Phytohormones signal and combine to maintain the physiological equilibrium in the plant.
Pathogens enhance host susceptibility by modulating the hormonal balance of the plant cell …

A plant-specific polarity module establishes cell fate asymmetry in the Arabidopsis stomatal lineage

MH Rowe, J Dong, AK Weimer, DC Bergmann - BioRxiv, 2019 - biorxiv.org
Generating cell polarity in anticipation of asymmetric cell division is required in many
developmental contexts across a diverse range of species. Physical and genetic diversity …

Gene regulatory networks in plants: learning causality from time and perturbation

G Krouk, J Lingeman, AM Colon, G Coruzzi, D Shasha - Genome biology, 2013 - Springer
The goal of systems biology is to generate models for predicting how a system will react
under untested conditions or in response to genetic perturbations. This paper discusses …

Hormonal crosstalk for root development: a combined experimental and modeling perspective

J Liu, J Rowe, K Lindsey - Frontiers in plant science, 2014 - frontiersin.org
Plants are sessile organisms and therefore they must adapt their growth and architecture to
a changing environment. Understanding how hormones and genes interact to coordinate …

Leveraging quantum computing for dynamic analyses of logical networks in systems biology

FM Weidner, JD Schwab, S Wölk, F Rupprecht… - Patterns, 2023 - cell.com
The dynamics of cellular mechanisms can be investigated through the analysis of networks.
One of the simplest but most popular modeling strategies involves logic-based models …

Multiscale systems analysis of root growth and development: modeling beyond the network and cellular scales

LR Band, JA Fozard, C Godin, OE Jensen… - The Plant …, 2012 - academic.oup.com
Over recent decades, we have gained detailed knowledge of many processes involved in
root growth and development. However, with this knowledge come increasing complexity …