Applying inductive logic programming to predicting gene function

RD King - AI Magazine, 2004 - ojs.aaai.org
One of the fastest advancing areas of modern science is functional genomics. This science
seeks to understand how the complete complement of molecular components of living …

Concept discovery on relational databases: new techniques for search space pruning and rule quality improvement

Y Kavurucu, P Senkul, IH Toroslu - Knowledge-Based Systems, 2010 - Elsevier
Multi-relational data mining has become popular due to the limitations of propositional
problem definition in structured domains and the tendency of storing data in relational …

A new relational tri-training system with adaptive data editing for inductive logic programming

Y Li, M Guo - Knowledge-Based Systems, 2012 - Elsevier
Relational Tri-training (R-Tri-training for short), as a relational semi-supervised learning
system, can effectively exploit unlabeled examples to improve the generalization ability …

Utilization of default logic for analyzing a metabolic system in discrete time

T Le, A Doncescu, P Siegel - 2013 13th International …, 2013 - ieeexplore.ieee.org
Metabolic pathways are seen as high criticalities in our understanding of mechanisms of
biological functions. This article focuses on automatic synthesis of the metabolic pathways …

Improving the scalability of ILP-based multi-relational concept discovery system through parallelization

A Mutlu, P Senkul, Y Kavurucu - Knowledge-Based Systems, 2012 - Elsevier
Due to the increase in the amount of relational data that is being collected and the limitations
of propositional problem definition in relational domains, multi-relational data mining has …

[PDF][PDF] Representation and efficient algorithms for the study of cell signaling pathways

A Doncescu, P Siegel, T Le - Proceedings of ICAI, 2014 - academia.edu
Artificial Intelligence and constraint programing find in the formal description of cell's
interactions a field of inquiry well suited. Particularly, the questions concerning the …

A graph-based concept discovery method for n-ary relations

NC Abay, A Mutlu, P Karagoz - … 2015, Valencia, Spain, September 1-4 …, 2015 - Springer
Abstract Concept discovery is a multi-relational data mining task for inducing definitions of a
specific relation in terms of other relations in the data set. Such learning tasks usually have …

Parallel and memory-efficient preprocessing for metagenome assembly

V Rengasamy, P Medvedev… - 2017 IEEE International …, 2017 - ieeexplore.ieee.org
The analysis of high-throughput metagenomic sequencing data poses significant
computational challenges. Most current de novo assembly tools use the de Bruijn graph …

Detection and characterization of physiological states in bioprocesses based on Hölder exponent

S Régis, A Doncescu, J Desachy - Knowledge-Based Systems, 2008 - Elsevier
Today, the pace of progress in fermentation is fast and furious, particularly since the advent
of genetic engineering and the recent advances in computer sciences and process control …

Bioprocess diagnosis based on the empirical use of distance measures in the theory of belief functions

S Régis, A Doncescu, N Goma - Engineering Applications of Artificial …, 2014 - Elsevier
Microorganisms plays a central role in the production of a wide range of industrial
chemicals, enzymes and antibiotics. The rate of product formation in a given industrial …