Dipeptidyl‐peptidases: Key enzymes producing entry forms of extracellular proteins in asaccharolytic periodontopathic bacterium Porphyromonas gingivalis

TK Nemoto, Y Ohara Nemoto - Molecular oral microbiology, 2021 - Wiley Online Library
Porphyromonas gingivalis, a pathogen of chronic periodontitis, is an asaccharolytic
microorganism that solely utilizes nutritional amino acids as its energy source and cellular …

Twenty-five years of nomenclature and classification of proteolytic enzymes

ND Rawlings - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2020 - Elsevier
Proteolytic enzymes and their homologues have been classified into clans by comparing the
tertiary structures of the peptidase domains, into families by comparing the protein …

Lipase congeners designed by genetic code engineering

MG Hoesl, CG Acevedo‐Rocha, S Nehring… - …, 2011 - Wiley Online Library
Classical enzyme optimization exploits the chemistry confined to the 20 canonical amino
acids encoded by the standard genetic code.'Genetic code engineering'allows the global …

Cryo-EM structure of acylpeptide hydrolase reveals substrate selection by multimerization and a multi-state serine-protease triad

AJ Kiss-Szemán, P Stráner, I Jákli, N Hosogi… - Chemical …, 2022 - pubs.rsc.org
The first structure of tetrameric mammalian acylaminoacyl peptidase, an enzyme that
functions as an upstream regulator of the proteasome through the removal of terminal N …

Taking advantage of promiscuity of cold-active enzymes

SK Nandanwar, SB Borkar, JH Lee, HJ Kim - Applied Sciences, 2020 - mdpi.com
Cold-active enzymes increase their catalytic efficiency at low-temperature, introducing
structural flexibility at or near the active sites. Inevitably, this feat seems to be accompanied …

Alpha/beta‐hydrolases: a unique structural motif coordinates catalytic acid residue in 40 protein fold families

PS Dimitriou, A Denesyuk, S Takahashi… - Proteins: Structure …, 2017 - Wiley Online Library
The alpha/beta‐hydrolases are a family of acid‐base‐nucleophile catalytic triad enzymes
with a common fold, but using a wide variety of substrates, having different pH optima …

Enzyme promiscuity in the hormone-sensitive lipase family of proteins

M Giuseppe, M Luigia, P Elena, F Yan… - Protein and Peptide …, 2012 - ingentaconnect.com
The number of enzymes endowed with the capacity to catalyse other reactions than the
main, physiological one, a feature that has been called promiscuity, is increasing at a fast …

A novel class of bifunctional acylpeptide hydrolases – potential role in the antioxidant defense systems of the Antarctic fish Trematomus bernacchii

M Gogliettino, A Riccio, M Balestrieri, E Cocca… - The FEBS …, 2014 - Wiley Online Library
Oxidative challenge is an important factor affecting the adaptive strategies of Antarctic fish,
but data on antioxidant defenses in these organisms remain scarce. In this context, a key …

Structure and catalysis of acylaminoacyl peptidase: closed and open subunits of a dimer oligopeptidase

V Harmat, K Domokos, DK Menyhárd, A Palló… - Journal of Biological …, 2011 - ASBMB
Acylaminoacyl peptidase from Aeropyrum pernix is a homodimer that belongs to the prolyl
oligopeptidase family. The monomer subunit is composed of one hydrolase and one …

A deeply conserved protease, acylamino acid-releasing enzyme (AARE), acts in ageing in Physcomitrella and Arabidopsis

SNW Hoernstein, B Özdemir, N van Gessel… - Communications …, 2023 - nature.com
Reactive oxygen species (ROS) are constant by-products of aerobic life. In excess, ROS
lead to cytotoxic protein aggregates, which are a hallmark of ageing in animals and linked to …